SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39790

Length: 507 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene39790
ATGGGGGGTTGCTCCCTCTCGTTCTGTTACTCTGCTCCTTCCCCAAGTTCTGGGAATGGCGATCATACAAGAATTAGAGGCAGAGGGCAAAGATTTCGCGATGGTGAAGATGAGTGACCTGCCATTCCACGGGAATGAGAAATTCTCGACAGACACTTCTGTTGCGGAACGCCAACAGAAGGATCCCAAAGAGATCGCCAGAAGATATCAGCTACAACTATGCGAGAAAGCTAAGGAAGAGAATATCATAGTGTACCTAGAAACAGGGTGCGGAAAGACTCTCATAGCTGTTCTGCTAATCCAAGAGTTCGCCCAGGCTATAAAAAAGCCCGGGAGGAATGTCTGCGTTTTCCTGGCGCCTACCGTGCCACTCGTTGAACAGCAAGCTGATGTCATCAGATCGCACTCAAAGTTCAAGGTGGGTCGATACTACGGGGAGGCAAAACATTCTTCCAAGGCCCATCGAGACTGGATAGAAGAGCTAGAAAAATACGAGGTTCTCGTAAT

Ace file of the UniGene sp_v2.0_unigene39790 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO	-	-	6.0e-31	58%
FL-Next	Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4	-	-	0.0	60%
Blast2go	dicer-like protein	-	-	3.31938e-36	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	3.31938e-36	69%
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	3.31938e-36	69%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	3.31938e-36	69%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	3.31938e-36	69%
Blast2go	vegetative phase change	GO:0010050	Biological Process	3.31938e-36	69%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	3.31938e-36	69%
Blast2go	protein binding	GO:0005515	Molecular Function	3.31938e-36	69%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	3.31938e-36	69%
Blast2go	nucleus	GO:0005634	Cellular Component	3.31938e-36	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Ribonuclease III domain	IPR000999	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Dicer double-stranded RNA-binding fold	IPR005034	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: A7LFZ6-2

Fln msg: Distance to subject end: 1499 aas, your sequence is shorter than subject: 150 - 1631

Fln protein: MAIIQELEAEGKDFAMVKMSDLPFHGNEKFSTDTSVAERQQKDPKEIARRYQLQLCEKAKEENIIVYLETGCGKTLIAVLLIQEFAQAIKKPGRNVCVFLAPTVPLVEQQADVIRSHSKFKVGRYYGEAKHSSKAHRDWIEELEKYEVLV

Protein Length: 151

Fln nts: ATGGGGGGTTGCTCCCTCTCGTTCTGTTACTCTGCTCCTTCCCCAAGTTCTGGGA_-_ATGGCGATCATACAAGAATTAGAGGCAGAGGGCAAAGATTTCGCGATGGTGAAGATGAGTGACCTGCCATTCCACGGGAATGAGAAATTCTCGACAGACACTTCTGTTGCGGAACGCCAACAGAAGGATCCCAAAGAGATCGCCAGAAGATATCAGCTACAACTATGCGAGAAAGCTAAGGAAGAGAATATCATAGTGTACCTAGAAACAGGGTGCGGAAAGACTCTCATAGCTGTTCTGCTAATCCAAGAGTTCGCCCAGGCTATAAAAAAGCCCGGGAGGAATGTCTGCGTTTTCCTGGCGCCTACCGTGCCACTCGTTGAACAGCAAGCTGATGTCATCAGATCGCACTCAAAGTTCAAGGTGGGTCGATACTACGGGGAGGCAAAACATTCTTCCAAGGCCCATCGAGACTGGATAGAAGAGCTAGAAAAATACGAGGTTCTCGTAAT

Fln Alignment:

AllPineV4_c36208___QQKDPKEIARRYQLQLCEKAKEENIIVYLETGCGKTLIAVLLIQEFAQAIKKPGRNVCVFLAPTVPLVEQQADVIRSHSKFKVGRYYGEAKHSSKAHRDWIEELEKYEVLV
A7LFZ6-2_____________EPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYGNGK-NSRDHQEWENDMREFEVLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain