SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39625

Length: 1052 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene39625

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1(10),5-germacradien-4-ol synthase n=1 Tax=Pinus sylvestris RepID=B4XAK5_PINSY	-	-	85%
FL-Next	tr=1(10),5-germacradien-4-ol synthase; Pinus sylvestris (Scots pine).	-	-	85%
Blast2go	longifolene synthase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B4XAK5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 263 - 625

Fln protein: GGTLKSDLC*VNSHSFEYPHTDFKAKVRLLASMAALNMVSGSILWANTYSPLPYLFLGSFVVWSLLVCIWVFNTWSKRHCRWERCLESYLQEAEWMAAGHIPSFNEYYKNGLASSGMCVLNLIPLLLMGQILPDDILKQIVYPSKIHDLLELTVRVKDDITDFEQEKERGEVASSLECYLKDNPECTREDALNHMKGILDLSVSQLNWEFLKHDNVPLCCKRFTFNVARGMHFLYKYKDFVSISEKEVKDQIFKVLMEPVQL*

Protein Length: 264

Fln nts: ATGGGGGAACACTGAAATCTGATTTATGTTGAGTGAATAGCCATAGCTTCGAATACCCACATACAGACTTTAAAGCTAAAGTTCGTTTGCTCGCTTCCATGGCAGCTCTCAACATGGTTTCCGGTTCAATTCTCTGGGCTAACACTTACAGCCCCCTTCCTTACCTCTTTCTTGGCTCGTTTGTGGTCTGGTCCTTATTGGTCTGCATATGGGTATTCAATACTTGGTCCAAACGGCACTGCCGGTGGGAGCGATGCCTCGAGTCTTATCTGCAAGAAGCGGAATGGATGGCGGCTGGACATATCCCCTCGTTTAATGAGTACTATAAGAATGGCCTCGCTAGCTCCGGGATGTGTGTGTTAAATTTGATTCCGCTTCTGTTAATGGGTCAAATTCTACCAGACGACATTCTGAAGCAAATAGTCTATCCATCCAAGATCCATGATCTGTTAGAACTGACGGTCCGAGTCAAGGACGACATTACGGATTTTGAGCAAGAGAAGGAACGCGGTGAGGTAGCTTCAAGTTTAGAGTGTTACCTCAAAGACAATCCGGAATGTACGCGTGAAGATGCTTTAAATCATATGAAAGGCATCCTGGATCTTTCTGTCAGCCAACTGAATTGGGAATTTCTAAAGCATGACAATGTGCCGCTTTGTTGCAAAAGGTTTACTTTCAATGTTGCACGAGGCATGCACTTCCTCTACAAATACAAAGATTTCGTATCCATTTCTGAGAAAGAGGTAAAGGACCAAATATTCAAAGTTCTTATGGAGCCAGTGCAGCTCTAA___ATATCATGGTCCTGGCGCATAGCCTTATCAATTTGCGCAGAGGGGTTTATATTTGATCGTCTTTTATTTGCCACCGCTATACACTAAATGTCGTTCAAAATATTCCAATGTCTTTTGGTGGGCAGTCGTAATATATTTCTAATATTGTAAGCCATTTAAAACCTTCTCACAATGGACCCATTTCGATTTCACCTTCTCACTCTGTCCGTGAAGATTTTGAATGGATAGCGGCCAATTCGACAATGAATAGAAACCTTTTTA

Fln Alignment:

AllPineV4_c35991___WERCLESYLQEAEWMAAGHIPSFNEYYKNGLASSGMCVLNLIPLLLMGQILPDDILKQIVYPSKIHDLLELTVRVKDDITDFEQEKERGEVASSLECYLKDNPECTREDALNHMKGILDLSVSQLNWEFLKHDNVPLCCKRFTFNVARGMHFLYKYKDFVSISEKEVKDQIFKVLMEPVQL
B4XAK5_______________WERYVESYLQEGEWMAAGYVPSFNEYYKNGLASSGMCVLNLIPLLLMDQILPDDILKQIVYPSKIHELLELTIRVKDDITDFEKEKEHGQVASCSECYMKDNPECTREDALNHMKGILDLSVSQLNWEFLKHDNVPLCYKRFTFNLARGMHFLFKYNDGITLSDNEVKDQIFKVLIQPLQL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
804	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain