SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene39187

Length: 373 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene39187
GCCTGAACGAAGTGTGGTTGCGATGACTGCAATGATTGCAGGGTATGCACATAATGGCTATATTGACGAAGCCTTGAGGCTGTTTTGGGAAATGCCCGAACCAGATGCGGTTTCGTGGACGACTGTCATCACTGCGTTGTCAAGGGGTGGACGACATGAAGAGGCCTTGATTCTTTTTTACCGAATGCAATGCGCAGGAATCGAACCGGATAGGTTCACTGTTGCCGGTGTTCTTCCAGCCTGTGCGAACATGGCAGCTCTGGAACACGGCAAGGAGGTTCATGAGTATCTAATTAGGAGTGGATTTCAATCGGACGTTTTTGTAGGGAGTGCGCTTGTAGATATGTATGTGAAATGTGGAATTATCAAAAAT

Ace file of the UniGene sp_v2.0_unigene39187

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01535, PPR, PPR repeat	-	-	9.0e-06	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	pentatricopeptide repeat-containing	-	-	5.76041e-35	65%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 202 aas, your sequence is shorter than subject: 124 - 644

Fln protein: PERSVVAMTAMIAGYAHNGYIDEALRLFWEMPEPDAVSWTTVITALSRGGRHEEALILFYRMQCAGIEPDRFTVAGVLPACANMAALEHGKEVHEYLIRSGFQSDVFVGSALVDMYVKCGIIKN

Protein Length: 125

Fln nts: GCCTGAACGAAGTGTGGTTGCGATGACTGCAATGATTGCAGGGTATGCACATAATGGCTATATTGACGAAGCCTTGAGGCTGTTTTGGGAAATGCCCGAACCAGATGCGGTTTCGTGGACGACTGTCATCACTGCGTTGTCAAGGGGTGGACGACATGAAGAGGCCTTGATTCTTTTTTACCGAATGCAATGCGCAGGAATCGAACCGGATAGGTTCACTGTTGCCGGTGTTCTTCCAGCCTGTGCGAACATGGCAGCTCTGGAACACGGCAAGGAGGTTCATGAGTATCTAATTAGGAGTGGATTTCAATCGGACGTTTTTGTAGGGAGTGCGCTTGTAGATATGTATGTGAAATGTGGAATTATCAAAAAT

Fln Alignment:

AllPineV4_c35350___PERSVVAMTAMIAGYAHNGYIDEALRLFWEMPEPDAVSWTTVITALSRGGRHEEALILFYRMQCAGIEPDRFTVAGVLPACANMAALEHGKEVHEYLIRSGFQSDVFVGSALVDMYVKCGIIKN
B8LLJ0_______________PERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain