SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38731

Length: 489 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene38731
ATGGGGAGCTATTTTGTGTGGGGAAATGCGAAGGAACAGTTGAATTCCCTTAACTCTCGTTTCGGAACAAAATATTGTACTCTTTGGTAGATAGCTGGATTCCCGCGGCGTCGCAGCTTCACTATCTGTGCAGTTGCACCACTTGTGGCTCCTATCAATAAATATGGTCCTGTTAATACGGAGCAGCATTTACTTTCTCTGTAAAGAGACTCTGAACTTTTGACCACCGAACGGCTTGAGCGAGTGGATTAACTTTGGCATGATTTAGGGAAACTGCCGAAATCGTCGAAGTTGTATTGCTCGAGATTGAAACTCTAAGTATGTTTATTTGAGTCACAGAGGAGGTAGAATGCGGGATCGGAAGTTGGACTCGGGATGGCTGGCTGCGCGGTCCACAGAAATAAATCTATCAGGCGTGGAGCTTACCACAACTCATCCTCCTTCACAACCTACAAAACCATGGATGGAGGGAGTTGTACCTGGCACTCG

Ace file of the UniGene sp_v2.0_unigene38731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Mannosylglycoprotein endo-beta-mannosidase; Lilium longiflorum (Trumpet lily).	-	-	0.0	67%
Blast2go	mannosylglycoprotein endo-beta-mannosidase-like	-	-	9.39106e-14	83%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 2	IPR006101	-	-
Sma3	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	IPR006102	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain	IPR013812	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q5H7P5

Fln msg: Distance to subject end: 906 aas, your sequence is shorter than subject: 46 - 953

Fln protein: MRDRKLDSGWLAARSTEINLSGVELTTTHPPSQPTKPWMEGVVPGT

Protein Length: 47

Fln nts: ATGGGGAGCTATTTTGTGTGGGGAAATGCGAAGGAACAGTTGAATTCCCTTAACTCTCGTTTCGGAACAAAATATTGTACTCTTTGGTAGATAGCTGGATTCCCGCGGCGTtGCAGCTTCACTATCTGTGCAGTTGCACCACTTGTGGCTCCTATCAATAAATATGGTCCTGTTAATACGGAGCAGCATTTACTTTCTCTGTAAAGAGACTCTGAACTTTTGACCACCGAACGGCTTGAGCGAGTGGATTAACTTTGGCATGATTTAGGGAAACTGCCGAAATCGTCGAAGTTGTATTGCTCGAGATTGAAACTCTAAGTATGTTTATTTGAGTCACAGAGGAGGTAGA_-_ATGCGGGATCGGAAGTTGGACTCGGGATGGCTGGCTGCGCGGTCCACAGAAATAAATCTATCAGGCGTGGAGCTTACCACAACTCATCCTCCTTCACAACCTACAAAACCATGGATGGAGGGAGTTGTACCTGGCACTCG

Fln Alignment:

AllPineV4_c34677___MRDRKLDSGWLAARSTEINLSGVELTTTHPPSQPTKPWMEGVVPGT
Q5H7P5_______________MGKQVLDSGWLAARSTELELTGVQLTTTRPPSGTSAPWIEAVVPGT

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
257		33		66	0.997452
466		33		66	0.997452
467	33		66		0.997452
468			66	33	0.997452
469	66			33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain