SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38405

Length: 216 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene38405
GTATGGAACACATTATTCGACTCCTGGCTATGTGCTATATTGGCTTGTCCGTTCTGCCCCTGCTCACATGCTTCGTTTGCAGAATGGACGCTTTGACACACCAGATCGACTTTTTGTTAGCATGGAAGAATCTTGGCAAAATGTCCTAAATAATACTGCTGACCTGAAGGAGCTTATTCCAGAATTTTTCAGTTTACCATCTGATTTTCTTAGAAT

Ace file of the UniGene sp_v2.0_unigene38405 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LvsF [Dictyostelium discoideum]	-	-	1.0e-21	71%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	85%
Blast2go	beach domain-containing protein	-	-	1.85107e-35	85%

Source	InterPros	Term	Type	Identity
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Membrane attack complex component/perforin/complement C9	IPR001862	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9U1Y1

Fln msg: Distance to subject end: 639 aas, your sequence is shorter than subject: 71 - 1216

Fln protein: YGTHYSTPGYVLYWLVRSAPAHMLRLQNGRFDTPDRLFVSMEESWQNVLNNTADLKELIPEFFSLPSDFLR

Protein Length: 72

Fln nts: GTATGGAACACATTATTCGACTCCTGGCTATGTGCTATATTGGCTTGTCCGTTCTGCCCCTGCTCACATGCTTCGTTTGCAGAATGGACGCTTTGACACACCAGATCGACTTTTTGTTAGCATGGAAGAATCTTGGCAAAATGTCCTAAATAATACTGCTGACCTGAAGGAGCTTATTCCAGAATTTTTCAGTTTACCATCTGATTTTCTTAGAAT

Fln Alignment:

AllPineV4_c34172___YGTHYSTPGYVLYWLVRSAPAHMLRLQNGRFDTPDRLFVSMEESWQNVLNNTADLKELIPEFFSLPSDFL
A9U1Y1_______________YGTHYSTPGYVLYWLVRAAPAHMLRLQNGRFDSPDRLFVSVAESWESVLNNPADLKELIPEFYAPPSDFL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
73		33	66		0.997453
118	33			66	0.997452
119	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain