SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38309

Length: 543 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene38309
AGGAAGAAACGACGACAACTTGCTGCTGAAACACGTCGCAAGGAACAGGAAATGTATGAACTCGCTGATCGGGAGGCTGATGAGTGGAGGGCAAGAGAGATTGCAAAAGATATAGCAAGGCGAAAGGTGGAGAAGATGAAAGAGATAGCAAAGATCAAAGCCAATGAGGAAAAACGAAGACTGGAATCAGAGCTGGAACTTGTATTGATTGTGGAAAAGCTCCAAGAACTTCGCTCTATCCGAATTCAGAAGTTAAAGAAACAAGGACATTTCCTTCCTGAAGAAGACAACAAATTTCTAGAACGTGTGCGGGCTGCTGTAGAAGAGGAGGAACGGCAAGCTGCAGCTGCGGCTGATACCAGTGCTGCAACAAATGCTATTGCTAATGCAGAGTCTCGAAAAGGCATGGGAACTATTGGGACTGGGTCTGGCAAAGAGGAACTAAGCAATCTCATCCAGAGTCAAACAAGCAACGAAAATACCATGGATAAAGGTCTGGTGGTACCAGACAAATCAGATGATGCACATGCAGATGATAAAAAA

Ace file of the UniGene sp_v2.0_unigene38309 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nop53 multi-domain protein	-	-	3.0e-07	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	programmed cell death protein	-	-	3.8982e-39	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	CTP synthase, N-terminal	IPR017456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADP8

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 181 - 455

Fln protein: RKKRRQLAAETRRKEQEMYELADREADEWRAREIAKDIARRKVEKMKEIAKIKANEEKRRLESELELVLIVEKLQELRSIRIQKLKKQGHFLPEEDNKFLERVRAAVEEEERQAAAAADTSAATNAIANAESRKGMGTIGTGSGKEELSNLIQSQTSNENTMDKGLVVPDKSDDAHADDKK

Protein Length: 182

Fln nts: AGGAAGAAACGACGACAACTTGCTGCTGAAACACGTCGCAAGGAACAGGAAATGTATGAACTCGCTGATCGGGAGGCTGATGAGTGGAGGGCAAGAGAGATTGCAAAAGATATAGCAAGGCGAAAGGTGGAGAAGATGAAAGAGATAGCAAAGATCAAAGCCAATGAGGAAAAACGAAGACTGGAATCAGAGCTGGAACTTGTATTGATTGTGGAAAAGCTCCAAGAACTTCGCTCTATCCGAATTCAGAAGTTAAAGAAACAAGGACATTTCCTTCCTGAAGAAGACAACAAATTTCTAGAACGTGTGCGGGCTGCTGTAGAAGAGGAGGAACGGCAAGCTGCAGCTGCGGCTGATACCAGTGCTGCAACAAATGCTATTGCTAATGCAGAGTCTCGAAAAGGCATGGGAACTATTGGGACTGGGTCTGGCAAAGAGGAACTAAGCAATCTCATCCAGAGTCAAACAAGCAACGAAAATACCATGGATAAAGGTCTGGTGGTACCAGACAAATCAGATGATGCACATGCAGATGATAAAAAA

Fln Alignment:

AllPineV4_c34017___RKKRRQLAAETRRKEQEMYELADREADEWRAREIAKDIARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSIRIQKLKKQGHFLPEEDNKFL-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGMGTIGTGSGKEELSNLIQSQTSNENTMDKGLVV
D5ADP8_______________RKKRRQLAAETRRKEDERYEKADREADEWRAREIAKDIARRKVEKMKEIAKIKSNEEKRRLESELELVLIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLERVRAAVEEEERQAAAAADTSAATNAIANAEESRKGMGTIGTGARKEELTNLIQRQTSKENTIDKGLVV

SNPs (tot: 3)

Position	A %	C %	T %	Probability
193	33	66		1.0
425	25	75		0.996473
426	25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain