SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38015

Length: 357 nt

UniGene Fasta

>sp_v2.0_unigene38015
AACCTATATTAAAGGAATTGGTGTAATGATGCAAAGATCTGACACGGTGATTGCAGATGCTTTGTGGGAAGCAATTCATGCTGAGGTTCAGGACTTTGTGCAAAACAAGCTGGCGACCATGTTGAGAACAACATTTAAAAGGAAGAAGGATCTTTCAAGGATCTTATCAGACATGAGGACTATTGCAGCAGATTGGATGGCAAGCACAAGCCGGCTTGAGTCTGAACATAACACAAAACGAGGAGGCGATGAGAATAATGGAGTGTCTTTAAGCCATTGCCTGTGGCACCAACAGCTGCTCAAGTACATTGTCTGCAGTTTTTGATATATGAACTCGTATCTGGTGGCAATCCAAAG

Ace file of the UniGene sp_v2.0_unigene38015

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein PIR [Arabidopsis thaliana] sp\|Q5S2C3.1\|PIR_ARATH RecName: Full=Protein PIR; AltName: Full=PIR of plants; AltName: Full=Protein KLUNKER; Short=AtSRA1; AltName: Full=Protein PIROGI gb\|AAV64873.1\| PIR [Arabidopsis thaliana] gb\|AED92556.1\| protein PIR	-	-	2.0e-37	67%
FL-Next	Isoform 2 of Protein PIR OS=Arabidopsis thaliana GN=PIR	-	-	0.0	67%
Blast2go	protein pir	-	-	9.87564e-39	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	9.87564e-39	85%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	9.87564e-39	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytoplasmic FMR1-interacting	IPR008081	-	0.0	-
Sma3	Cytoplasmic FMR1-interacting, subgroup	IPR016536	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5S2C3-2

Fln msg: Separated hits, possible frame ERROR between 262 and 268, Distance to subject end: 699 aas, your sequence is shorter than subject: 119 - 1283

Fln protein: TYIKGIGVMMQRSDTVIADALWEAIHAEVQDFVQNKLATMLRTTFKRKKDLSRILSDMRTIAADWMASTSRLESEHNTKRGGDENNxxxFKPLPVAPTAAQVHCLQFLIYELVSGGNPK

Protein Length: 120

Fln nts: AACCTATATTAAAGGAATTGGTGTAATGATGCAAAGATCTGACACGGTGATTGCAGATGCTTTGTGGGAAGCAATTCATGCTGAGGTTCAGGACTTTGTGCAAAACAAGCTGGCGACCATGTTGAGAACAACATTTAAAAGGAAGAAGGATCTTTCAAGGATCTTATCAGACATGAGGACTATTGCAGCAGATTGGATGGCAAGCACAAGCCGGCTTGAGTCTGAACATAACACAAAACGAGGAGGCGATGAGAATAATGGxxxxxxCTTTAAGCCATTGCCTGTGGCACCAACAGCTGCTCAAGTACATTGTCTGCAGTTTTTGATATATGAACTCGTATCTGGTGGCAATCCAAAG

Fln Alignment:

AllPineV4_c33586___YIKGIGVMMQRSDTVIADALWEAIHAEVQDFVQNKLATMLRTTFKRKKDLSRILSDMRTIAADWMASTSRLESEHNTKRGGDENNGxxFKPLPVAPTAAQVHCLQFLIYELVSGGN
Q5S2C3-2_____________YIKSVGSMLQRCDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTRPEHEMPSSQHGNDESRGxxFYPRPVAPTAAQVHCLQFLIYEVVSGGN

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
156		75		25	0.996473
160			75	25	0.996473
161			75	25	0.996473
256	66		33		0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain