SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene38001

Length: 534 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene38001
TCCCGAATTTCCAGATGGAGCAGTTGCCAGGACGTGCGCGGAATGCAAAACGGACAGAACGCCGCTCTGGAGAAATGGCCCCGACGGACCAAAGTCTCTGTGTAATGCCTGCGGTATTCGGTTCAAGAAGATCGGAAAGCGCGAGCAGCAGCAGAAATCGGCTTCAAGGCTCCCTCCCTTGTCTTCCCCCAGGCAGATGACAGCGAAGCGCAAGCAACAAGACACCGATGAATATGATCCGTTGCGGCCAGATGCAGCCGTCGCCGCCGCGTTGTACCCGGTGCGCAAGAAAAGCGTCGGAGCCGTTACGGCGGTGCCTACAGGCGGTCGTCACAGGGATCGTCGGCGGTCCGTGGAGGAATCCAATTCAACTGAGCGCCGGTCCGTTGAAGATTCCAGTTCAACGGAGCGCCGGTTCTTGAAACTGGAAGCGTTGCTGGGAGGAGTGCCGGTTCTTGAATAATGGAAGCGTTGCTGGGAGGAGAGAGGGGCAACGAGCTCCAATTCCTTGATGATGATGCGCAGGTCCTTTGC

Ace file of the UniGene sp_v2.0_unigene38001

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor-like protein [Arabidopsis thaliana]	-	-	2.0e-11	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	protein	-	-	3.71209e-16	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	3.71209e-16	71%
Blast2go	regulation of flower development	GO:0009909	Biological Process	3.71209e-16	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	3.71209e-16	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	0.0	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB8

Fln msg: your sequence is shorter than subject: 154 - 380

Fln protein: PEFPDGAVARTCAECKTDRTPLWRNGPDGPKSLCNACGIRFKKIGKREQQQKSASRLPPLSSPRQMTAKRKQQDTDEYDPLRPDAAVAAALYPVRKKSVGAVTAVPTGGRHRDRRRSVEESNSTERRSVEDSSSTERRFLKLEALLGGVPVLE*

Protein Length: 155

Fln nts: TCCCGAATTTCCAGATGGAGCAGTTGCCAGGACGTGCGCGGAATGCAAAACGGACAGAACGCCGCTCTGGAGAAATGGCCCCGACGGACCAAAGTCTCTGTGTAATGCCTGCGGTATTCGGTTCAAGAAGATCGGAAAGCGCGAGCAGCAGCAGAAATCGGCTTCAAGGCTCCCTCCCTTGTCTTCCCCCAGGCAGATGACAGCGAAGCGCAAGCAACAAGACACCGATGAATATGATCCGTTGCGGCCAGATGCAGCCGTCGCCGCCGCGTTGTACCCGGTGCGCAAGAAAAGCGTCGGAGCCGTTACGGCGGTGCCTACAGGCGGTCGTCACAGGGATCGTCGGCGGTCCGTGGAGGAATCCAATTCAACTGAGCGCCGGTCCGTTGAAGATTCCAGTTCAACGGAGCGCCGGTTCTTGAAACTGGAAGCGTTGCTGGGAGGAGTGCCGGTTCTTGAATAA___TGGAAGCGTTGCTGGGAGGAGAGAGGGGCAACGAGCTCCAATTCCTTGATGATGATGCGCAGGTCCTTTGC

Fln Alignment:

AllPineV4_c33563___VARTCAECKTDRTPLWRNGPDGPKSLCNACGIRFKK
B8LRB8_______________VPRVCVDCKTTKTPLWRSGPQGPKSLCNACGIRYRK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
261	25			75	0.996473
273		25		75	0.996473
358	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain