SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37971

Length: 304 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene37971
TGAAGAGGATCATCACAGCACGTATATTGACAAAGATGATTAATTATGTACAACTGTTACCTGTTTGGCGATGTGAGTTCCTTGTTGGTTGCCATTCAGGGATGAAAGAAATGTCACGGGCAAAAATGAACAAGATTGTTGATAAATTCCGTTCTGGAGAGTTTAATCTACTGGTGGCAACTAATGTTGCTGAAGAAGGCCTTGATATTCAAACTTGCTGTCTGGTGGTACGCTTTGATCTTCCAAACACTGTTGCTAGCTTCATACAATCTAGAGGTCGTGCACGAATGCAGGAGTCAGGCTA

Ace file of the UniGene sp_v2.0_unigene37971

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2	-	-	1.0e-32	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	dicer-like protein	-	-	1.05491e-38	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	1.05491e-38	78%
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	1.05491e-38	78%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	1.05491e-38	78%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	1.05491e-38	78%
Blast2go	vegetative phase change	GO:0010050	Biological Process	1.05491e-38	78%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	1.05491e-38	78%
Blast2go	protein binding	GO:0005515	Molecular Function	1.05491e-38	78%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	1.05491e-38	78%
Blast2go	nucleus	GO:0005634	Cellular Component	1.05491e-38	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Ribonuclease III domain	IPR000999	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Dicer double-stranded RNA-binding fold	IPR005034	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Distance to subject end: 310 aas, your sequence is shorter than subject: 100 - 802

Fln protein: KRIITARILTKMINYVQLLPVWRCEFLVGCHSGMKEMSRAKMNKIVDKFRSGEFNLLVATNVAEEGLDIQTCCLVVRFDLPNTVASFIQSRGRARMQESG

Protein Length: 101

Fln nts: TGAAGAGGATCATCACAGCACGTATATTGACAAAGATGATTAATTATGTACAACTGTTACCTGTTTGGCGATGTGAGTTCCTTGTTGGTTGCCATTCAGGGATGAAAGAAATGTCACGGGCAAAAATGAACAAGATTGTTGATAAATTCCGTTCTGGAGAGTTTAATCTACTGGTGGCAACTAATGTTGCTGAAGAAGGCCTTGATATTCAAACTTGCTGTCTGGTGGTACGCTTTGATCTTCCAAACACTGTTGCTAGCTTCATACAATCTAGAGGTCGTGCACGAATGCAGGAGTCAGGCTA

Fln Alignment:

AllPineV4_c33511___VGCHSGMKEMSRAKMNKIVDKFRSGEFNLLVATNVAEEGLDIQTCCLVVRFDLPNTVASFIQSRGR
B8LKW8_______________IACEALHGDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain