SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37967

Length: 325 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene37967
AATGTAATATAATCATGGAGCCATTGACATGAGGCTGGGGACTCTGCGAACCGTAGTTCCCGGTGGCGGGAATATGGGCATTGATACCCTTTTCAAGGAAACTGCTGACTACATCTTGAATCTTGAAATGCAAGTGCACGCCCTGGAAACCCTAGCAGAATTTTACACCAACAGTTATGCAGATATTGTGGACAGCAGCAGGGACTAGAGGGAAGAGGTTGTCATGCTATGTTAATATATTTATCTTCTTATTAGATCTAAGTAGATGATTACGCGCATCTATATATCTACTTTCACGCTATCAGGTGAAATCTAGGGACCAGAA

Ace file of the UniGene sp_v2.0_unigene37967

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phy rapidly regulated 2 protein [Arabidopsis thaliana] emb\|CAB88302.1\| putative protein [Arabidopsis thaliana] gb\|AAR92241.1\| At3g58850 [Arabidopsis thaliana] gb\|AAS76234.1\| At3g58850 [Arabidopsis thaliana] dbj\|BAF01099.1\| hypothetical protein [Arabidopsi	-	-	8.0e-06	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	phy rapidly regulated 2 protein	-	-	5.36312e-20	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	5.36312e-20	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Methane metabolism	00680		5.36312e-20	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	5.36312e-20	75%
Blast2go	shade avoidance	GO:0009641	Biological Process	5.36312e-20	75%
Blast2go	formaldehyde metabolic process	GO:0046292	Biological Process	5.36312e-20	75%
Blast2go	heat acclimation	GO:0010286	Biological Process	5.36312e-20	75%
Blast2go	cell death	GO:0008219	Biological Process	5.36312e-20	75%
Blast2go	seed development	GO:0048316	Biological Process	5.36312e-20	75%
Blast2go	S-(hydroxymethyl)glutathione dehydrogenase activity	GO:0051903	Molecular Function	5.36312e-20	75%
Blast2go	S-nitrosoglutathione reductase activity	GO:0080007	Molecular Function	5.36312e-20	75%
Blast2go	peroxisome	GO:0005777	Cellular Component	5.36312e-20	75%
Blast2go	nucleus	GO:0005634	Cellular Component	5.36312e-20	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9V6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 69 - 179

Fln protein: M*YNHGAIDMRLGTLRTVVPGGGNMGIDTLFKETADYILNLEMQVHALETLAEFYTNSYADIVDSSRD*

Protein Length: 70

Fln nts: AATGTAATATAATCATGGAGCCATTGACATGAGGCTGGGGACTCTGCGAACCGTAGTTCCCGGTGGCGGGAATATGGGCATTGATACCCTTTTCAAGGAAACTGCTGACTACATCTTGAATCTTGAAATGCAAGTGCACGCCCTGGAAACCCTAGCAGAATTTTACACCAACAGTTATGCAGATATTGTGGACAGCAGCAGGGACTAG___AGGGAAGAGGTTGTCATGCTATGTTAATATATTTATCTTCTTATTAGATCTAAGTAGATGATTACGCGCATCTATATATCTACTTTCACGCTATCAGGTGAAATCTAGGGACCAGAA

Fln Alignment:

AllPineV4_c33506___YNHGAIDMRLGTLRTVVPGGGNMGIDTLFKETADYILNLEMQVHALETLAEFYTNS
D5A9V6_______________HDHGSIGGRLGTLQRLVPGGRNMGFDTLFQETADYILNLEVQVHAMEALAEFYASS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
278	25		75		0.996473
287		33		66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain