SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37445

Length: 522 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene37445
GGAAAATGGACCGTAACTTTGATGCAACAAATGAAAGAGAATGCTTTTCATGTTACTATGATCTGCATCTTTCTGCTGTAGGCTGTGAGTGCTGCCCAGAGAGGTTTGCATGTTTGCAACACGGAAAACAAATTTGTGCGTGTCCTTGGAACAGGAAATTTTTCCTTTATCGGTATGATATTACTGAGTTGGATATACTCGTTGAAGCTCTAGAAGGAAAGCTGGATTCTATTTCCAGATGGGTCACTATGGATTTGGGATTGGCTCTAAGTTCATATATAACCAGTCCAAACATGCAAGCAGGAGTTGAACCAAAAGCAATATCTCTCTGTGTGAATTCTCAGAAAAACAATAAGGATATAAATGTTTTGGTGGGAGAATCTAAGGCCTCATTTACTAGTATGTTAAACTTGGCATGCAGAGCTAATGTTGGAGACCTGATGGTATCTTCGGCCATGCAACGTCAGGAAAGTAAATTAATTGACCATGCACCTACATTAGTTGTGGGAAATGATGGTTTAC

Ace file of the UniGene sp_v2.0_unigene37445

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor jumonji and C5HC2 type zinc finger domain-containing protein [Arabidopsis thaliana] gb\|AAM83250.1\| At2g38950/T7F6.12 [Arabidopsis thaliana] gb\|AAN46869.1\| At2g38950/T7F6.12 [Arabidopsis thaliana] gb\|AEC09616.1\| transcription factor ju	-	-	3.0e-23	41%
FL-Next	Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14	-	-	0.0	51%
Blast2go	probable lysine-specific demethylase jmj14-like	-	-	3.97969e-43	75%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L32p	IPR002677	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Transcription factor jumonji, JmjN	IPR003349	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	Zinc finger, C5HC2-type	IPR004198	-	-
Sma3		IPR013129	-	-
Sma3	FY-rich, C-terminal subgroup	IPR018516	-	-
Sma3	FY-rich, N-terminal subgroup	IPR018518	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GUI6-2

Fln msg: Distance to subject end: 276 aas, your sequence is shorter than subject: 173 - 897

Fln protein: KMDRNFDATNERECFSCYYDLHLSAVGCECCPERFACLQHGKQICACPWNRKFFLYRYDITELDILVEALEGKLDSISRWVTMDLGLALSSYITSPNMQAGVEPKAISLCVNSQKNNKDINVLVGESKASFTSMLNLACRANVGDLMVSSAMQRQESKLIDHAPTLVVGNDGL

Protein Length: 174

Fln nts: GGAAAATGGACCGTAACTTTGATGCAACAAATGAAAGAGAATGCTTTTCATGTTACTATGATCTGCATCTTTCTGCTGTAGGCTGTGAGTGCTGCCCAGAGAGGTTTGCATGTTTGCAACACGGAAAACAAATTTGTGCGTGTCCTTGGAACAGGAAATTTTTCCTTTATCGGTATGATATTACTGAGTTGGATATACTCGTTGAAGCTCTAGAAGGAAAGCTGGATTCTATTTCCAGATGGGTCACTATGGATTTGGGATTGGCTCTAAGTTCATATATAACCAGTCCAAACATGCAAGCAGGAGTTGAACCAAAAGCAATATCTCTCTGTGTGAATTCTCAGAAAAACAATAAGGATATAAATGTTTTGGTGGGAGAATCTAAGGCCTCATTTACTAGTATGTTAAACTTGGCATGCAGAGCTAATGTTGGAGACCTGATGGTATCTTCGGCCATGCAACGTCAGGAAAGTAAATTAATTGACCATGCACCTACATTAGTTGTGGGAAATGATGGTTTAC

Fln Alignment:

AllPineV4_c32655___KMDRNFDATNERECFSCYYDLHLSAVGCECCPERFACLQHGKQICACPWNRKFFLYRYDITELDILVEALEGKLDSISRWVT
Q8GUI6-2_____________KMEGDFDNKRERECFLCFYDLHMSASSCKCSPNRFACLIHAKDLCSCESKDRYILIRHTLDELWALVRALEGDLDAIDLWAS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain