SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene37051

Length: 605 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene37051

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast nucleoid DNA binding protein, putative n=3 Tax=Arabidopsis RepID=Q8L9B9_ARATH	-	-	3.0e-34	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	aspartic proteinase nepenthesin-1-like	-	-	0.0	64%

Source	GOs	Term	Type	Identity
Blast2go	membrane	GO:0016020	Cellular Component	64%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	64%
Blast2go	response to karrikin	GO:0080167	Biological Process	64%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
235		66		33	0.997452
236			33	66	0.997452
237		66	33		0.997452
238		66	33		0.997452
245		33		66	0.997452
269		66		33	0.997452
297		33		66	0.997452
330	33		66		0.997476
332	33		66		0.997471
338	66			33	0.997452
339	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain