SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36947

Length: 529 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene36947
GACATTCAATCTTATGCCTTGTTAGGTATCCTCTATATGGAGGGATGCAAGATTGGAACTATATACATGGAGGCTGCCTTGAATTGACACTGGAGATTAGTGATGAGAAATGGCCTGCAGCAAAAGAGATTCCTTTACTTTGGGAACATAATCGAATGAGCATGTTGCAGCTGGTAGCAAGCCTTGTAAAGACAGGAATACATGGAAGAGTCATATCATCATATTTGGGCCAGTCGTTACCTGCATCTGTTCAGATTGCTGGCATTAACCATACTGTTATTGCAGGGGATCGCTTTGGTGATTATCACCGGCTACTTTTTCCAGGTCGTGCTTACGAAGTCACGGCCAGTATACCTGGGTATTCTTCAAGGACTACCCATATCATGCTAGTAGAAGAGAAAGCTACATATGCTGATTTCATCTTGGACCCATCAGGTCCAGCAATGAAATTACAAGAGAGACAATCACAAGCATTTCTTAAAGAAGGTTCTCTACATGACAATGATTGTAACTGCAGCTGCAATATGGA

Ace file of the UniGene sp_v2.0_unigene36947

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc carboxy peptidase [Brachypodium sylvaticum]	-	-	1.4013e-45	53%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	59%
Blast2go	carboxypeptidase d	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Carboxypeptidase, regulatory domain	IPR014766	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H7W5

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 175 - 422

Fln protein: HSILCLVRYPLYGGMQDWNYIHGGCLELTLEISDEKWPAAKEIPLLWEHNRMSMLQLVASLVKTGIHGRVISSYLGQSLPASVQIAGINHTVIAGDRFGDYHRLLFPGRAYEVTASIPGYSSRTTHIMLVEEKATYADFILDPSGPAMKLQERQSQAFLKEGSLHDNDCNCSCNM

Protein Length: 176

Fln nts: GACATTCAATCTTATGCCTTGTTAGGTATCCTCTATATGGAGGGATGCAAGATTGGAACTATATACATGGAGGCTGCCTTGAATTGACACTGGAGATTAGTGATGAGAAATGGCCTGCAGCAAAAGAGATTCCTTTACTTTGGGAACATAATCGAATGAGCATGTTGCAGCTGGTAGCAAGCCTTGTAAAGACAGGAATACATGGAAGAGTCATATCATCATATTTGGGCCAGTCGTTACCTGCATCTGTTCAGATTGCTGGCATTAACCATACTGTTATTGCAGGGGATCGCTTTGGTGATTATCACCGGCTACTTTTTCCAGGTCGTGCTTACGAAGTCACGGCCAGTATACCTGGGTATTCTTCAAGGACTACCCATATCATGCTAGTAGAAGAGAAAGCTACATATGCTGATTTCATCTTGGACCCATCAGGTCCAGCAATGAAATTACAAGAGAGACAATCACAAGCATTTCTTAAAGAAGGTTCTCTACATGACAATGATTGTAACTGCAGCTGCAATATGGA

Fln Alignment:

AllPineV4_c31784___YPLYGGMQDWNYIHGGCLELTLEISDEKWPAAKEIPLLWEHNRMSMLQLVASLVKTGIHGRVISSYLGQSLPASVQIAGINHTVIAGDRFGDYHRLLFPGRAYEVTASIPGYSSRTTHIMLVEEKATYADFILDPSGPAMKLQERQSQAFLKEGSLHD-NDCNC
B9H7W5_______________YPIYGGMQDWNYIHAGCFELTLEISENKWPNANELPTLWEYNKMSLLNLAASLVKTGIHGRIFSSDSGMPLPGSVSIKGINYTVKAGRGFADYHRLLAPGERYEVMATMPGYKPKTTRISL-EEAAMTLDFILDPE-------------VTTKGSLRSINDCRC

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
227		33	66		0.997452
229			66	33	0.997452
231		66	33		0.997452
232	66			33	0.997452
234	33			66	0.997452
236		33	66		0.997452
239	66		33		0.997452
240		66	33		0.997452
250	33			66	0.997452
257	83	16			0.994512
258			16	83	0.994512
260		16	83		0.994512
261		83	16		0.994512
264	16		83		0.994512
266	83	16			0.994512
269	83		16		0.994512
270	83		16		0.994512
272		83		16	0.994512
273	83		16		0.994512
292		20	80		0.995493
297	20		80		0.995493
331		25		75	0.996473
340		75		25	0.996473
415		25		75	0.996473
475	66			33	0.997467
476			66	33	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain