SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36792

Length: 877 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36792

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5	-	-	1.0e-36	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	34%
Blast2go	midasin-like protein	-	-	1.90412e-36	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	1.90412e-36	58%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-3	IPR011703	-	-
Sma3	ATPase, dynein-related, AAA domain	IPR011704	-	-
Sma3	Midasin	IPR012099	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HXY6

Fln msg: Separated hits, possible frame ERROR between 434 and 467, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1061 aas, your sequence is shorter than subject: 292 - 4800

Fln protein: VH**STTLFFAITFFGRAHHGS*RNLADMGIHI**TNDKLLLR*FI*CSYENNSCFCEALQLWSTEK**ALSLCKKYAWMSSHICGYSLKCWKQSLV*LSGYA*DSSKMDYILSNVFAAFYVDGFIVAKEELEEEGNNLRFEDxxxxxxxxxxxxKDVSDQIENEDQLLGDSEKPNEEHTASQKLSTDPDKGIEMEQDFNTSDMFSVSEDSGDESGEDDQEENIESAMGKTGEDEDVVDEQLWNKDQDFKPENAKEKYETGASVQDTMSDSMELRAKQDARNDEEGAQDKNC

Protein Length: 293

Fln nts: AAGTTCACTGATAAAGCACGACACTGTTTTTTGCCATCACGTTCTTTGGACGAGCACACCATGGATCCTGAAGGAACCTTGCAGACATGGGAATCCATATTTAATGAACAAATGACAAGCTTTTGCTTAGATGATTTATATGATGCTCTTATGAAAACAATAGCTGCTTCTGTGAAGCTCTTCAACTGTGGAGCACAGAAAAATAGTGAGCCTTGTCTCTCTGCAAGAAATATGCTTGGATGTCTTCACATATTTGTGGATATAGTCTTAAATGCTGGAAACAGAGTCTTGTCTGATTATCTGGATATGCATAAGACAGTAGCAAAATGGATTATATTCTTTCAAACGTCTTTGCAGCATTCTATGTAGATGGATTCATTGTAGCCAAAGAAGAGCTTGAGGAAGAGGGCAATAATCTTAGGTTTGAAGATGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGGATGTTAGTGATCAGATAGAAAATGAAGATCAACTACTTGGGGATTCTGAAAAGCCAAATGAAGAGCACACTGCATCCCAAAAACTCTCAACTGATCCTGATAAAGGCATAGAGATGGAACAGGATTTTAATACAAGTGATATGTTTAGTGTCAGCGAGGATTCAGGTGATGAGAGTGGGGAAGATGATCAAGAGGAAAATATTGAGTCAGCCATGGGGAAGACAGGCGAGGATGAAGATGTGGTTGACGAACAGCTGTGGAACAAAGATCAGGATTTTAAACCAGAAAATGCGAAAGAAAAATACGAAACTGGGGCTTCTGTACAGGATACCATGTCAGACTCAATGGAGCTCAGAGCAAAGCAGGATGCAAGAAATGATGAAGAGGGGGCACAAGATAAAAATTGT

Fln Alignment:

AllPineV4_c31519___SKMDYILSNVFAAFYVDGFIVAKEELEEEGNNLRFEDAxxxxxxxxxxxKDVSDQIENEDQLLGDSEKPNEEHTASQKLSTDPDKGIEMEQDFNTSDMFXXXXXXXXXXXXXXXXXNIESAMGKTGEDEDVVDEQLWNKDQDFKPENAKEKYETGASVQDTMSDSMELRAKQD---ARNDEEG
F6HXY6_______________SMMTHVLANVFASLYSEGFGTPTEDQIDDNSHDTSKDAxxxxxxxxxxxKDVSDQITDEDQLLGASEKPSEEQDVSDEVPSKNDKGIEMEQDF-AADTFSVSEESGDDDNEDSGDEQLDSAMGETGADSEIVDEKLWNKDADENANNTKEKYESGPSVTDKDASSRELRAKEDDAAAAADEPG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
563		66		33	0.997453
630		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain