SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36541

Length: 505 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene36541
CGTCGTGACCTTGGCTGTCACTCATATCTTTAAATCTCTGAGCATCACAGACTGCGAAGAGAATGGATCGGCTTTTTGCAGCCAACGAGTTTCCCTTCAGAGTCCGCTTCACAGGACACAGCGGCCACCTAAGAGTAGAACCTCTTCCTCCTGTTGAGCGCCGAACGCCTCTTAGAAGTCTGCAAGAATAAATAAAGTTGAAAGGAGACTTCTAGAAGACCCTTATGTGGCACTCTAAGGCCAAATTCGAATTTGGTTGGAAAGAATCATGGGATCATGAGGATATGTGTCACATCTCCTAATTGTATTGTAACTCTAAGAAGACATGTGTCTTATCAGTTCCTATTTTGATTAGGACTCTAGAGGTAGAGGGAGAGATTCATGGACTCTCATTAATGAGATGGCTCTCATCTTTTTGTACAAATAGGAGATATCTCTCCTCCATTTGTTAGTCTAACCTTAGTCCTTATTAGCTTGTTAGTCCCTAGTTCTTAAGTTTGACATT

Ace file of the UniGene sp_v2.0_unigene36541 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019836E3	-	-	1.0e-06	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	helicase ski2w-like	-	-	1.53725e-07	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: D7SK36

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 185 aas, your sequence is shorter than subject: 43 - 333

Fln protein: MDRLFAANEFPFRVRFTGHSGHLRVEPLPPVERRTPLRSLQE*

Protein Length: 44

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATCTTTAAATCTCTGAGCATCACAGACTGCGAAGAGA_-_ATGGATCGGCTTTTTGCAGCCAACGAGTTTCCCTTCAGAGTCCGCTTCACAGGACACAGCGGCCACCTAAGAGTAGAACCTCTTCCTCCTGTTGAGCGCCGAACGCCTCTTAGAAGTCTGCAAGAATAAATAAAGTTGAAAGGAGACTTCTAGAAGACCCTTATGTGGCACTCTAAGGCCAAATTCGAATTTGGTTGGAAAGAATCATGGGATCATGAGGATATGTGTCACATCTCCTAATTGTATTGTAACTCTAAGAAGACATGTGTCTTATCAGTTCCTATTTTGATTAGGACTCTAGAGGTAGAGGGAGAGATTCATGGACTCTCATTAATGAGATGGCTCTCATCTTTTTGTACAAATAGGAGATATCTCTCCTCCATTTGTTAGTCTAACCTTAGTCCTTATTAGCTTGTTAGTCCCTAGTTCTTAAGTTTGACATT

Fln Alignment:

AllPineV4_c30920___MDRLFAANEFPFRVRFTGHSGHLRVEPLPPVERRTPLRSLQE
D7SK36_______________MNRIQVGHDASFRVGFSGHSGHLRLEPLPPVERPNPLSSLPD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
134		33		66	0.997452
139	33	66			0.997452
145		66		33	0.997452
170	66		33		0.997453
184		33		66	0.997452
267	33			66	0.997476
275			66	33	0.997452
300	66		33		0.997452
305		66		33	0.997452
315	33	33		33	0.997743

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain