SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36476

Length: 1256 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36476 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TRAUCO n=1 Tax=Pinus radiata RepID=B3V288_PINRA	-	-	72%
FL-Next	tr=TRAUCO; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	76%
Blast2go	set1 ash2 histone methyltransferase complex subunit ash2	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	77%
Blast2go	simple leaf morphogenesis	GO:0060776	Biological Process	77%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	histone methylation	GO:0016571	Biological Process	77%
Blast2go	chromatin DNA binding	GO:0031490	Molecular Function	77%
Blast2go	Set1C/COMPASS complex	GO:0048188	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B3V288

Fln msg: Separated hits, possible frame ERROR between 564 and 599, your sequence is shorter than subject: 314 - 412

Fln protein: RRDLGCHSIWWGYCY*KAQKKNTNVWTKSTSRKSNKKNRANGNTAAEDTTLITPVTRLLDKVDDTPDMRICLSKIHKAERIELSEDRLTAGSTKGYRMVRATRGVVEGAWYFEIKVVYLGQTGHTRLGWSTEKGDVDAPVGYDGNSYAYRDVDGTKVHKAIREPYGDGPYVEGDVIGFYINLPNGSExxxxxxxxxxxxxGQLHYINAVEEAPKVVPGSEILFFVNGICQGVAFKDINGGRYYPAASIYTLPNQPNCTVQFNFGPEFDCFPEDFGNRPIPKAMCEASYCGIDGQAVHHGETLVENGQSSEKKA*

Protein Length: 315

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGGTGGGGATACTGCTATTAAAAAGCCCAAAAGAAAAACACTAATGTCTGGACCAAATCAACGTCCAGGAAGTCGAACAAGAAGAACAGGGCTAATGGCAATACCGCAGCAGAAGATACTACTCTCATAACTCCTGTCACCAGGCTGCTTGATAAGGTAGATGATACCCCAGACATGAGAATTTGCCTCTCAAAAATCCACAAGGCAGAAAGGATTGAGTTGAGTGAAGATAGACTGACTGCAGGGAGCACTAAGGGGTACAGAATGGTGAGGGCTACTAGGGGTGTGGTGGAGGGGGCATGGTATTTTGAGATCAAGGTTGTTTACCTCGGTCAAACTGGGCATACCAGATTGGGATGGTCTACAGAGAAAGGAGATGTTGACGCTCCTGTGGGTTATGATGGGAATAGCTATGCCTACAGAGATGTTGATGGCACTAAAGTTCATAAGGCTATCAGAGAGCCCTATGGGGACGGACCTTACGTGGAGGGTGACGTTATTGGGTTTTATATTAATTTGCCCAATGGCAGTGAGTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGTCAGCTTCATTACATCAACGCAGTAGAGGAAGCGCCAAAGGTGGTGCCTGGAAGTGAGATATTATTCTTTGTAAATGGGATATGTCAAGGTGTTGCTTTCAAGGATATAAATGGTGGCAGATATTACCCTGCAGCTTCTATTTACACCCTTCCAAATCAACCTAACTGTACAGTGCAGTTTAATTTTGGACCAGAATTTGATTGCTTTCCTGAGGACTTTGGCAATCGACCCATTCCCAAGGCCATGTGCGAGGCTTCTTATTGTGGAATTGACGGGCAAGCAGTCCACCATGGAGAAACTCTTGTTGAAAATGGTCAATCTTCAGAAAAGAAAGCTTGATTTTTTGGTATATTTTTTCATTTTAGAACTGAGACAGTATATCGCTGTTGGTAGTGCTTACCTTTGCATAAAATCTTGATCTGTGGGATGCGTGTGGTGGCAATTCTTTTATGACATTCTAGGTTTCTTAATAATTTATAGGAAAGAAATTTCTATTATGCTGTATGAAAGCTTGCAAATGCCATTCAGCTGAATGTGGATAATCACGCAACTGATGTCCTTGCTATGGATTGAATCTGTTTAGTTCCATCAATTGCACCCTACATGCAGACTGTATCAGATAGCAGATGATTATGGTCTCCACCATGATTACATT

Fln Alignment:

AllPineV4_c30726___WWGYC----Y*KAQKKNTNVWXXXXXXXXXXXXRANGNTAAEDTTLITPVTRLLDKVD--DTPDMRICLSKIHKAERIELSEDRLTAGSTKGYRMVRATRGVVEGAWYFEIKVVYLGQTGHTRLGWSTEKGDVDAPVGYDGNSYAYRDVDGTKVHKAIREPYGDGPYVEGDVIGFYINLPNGSEYxxxxxxxxxxxxGQLH--YINAVEEAPKVVPGSEILFFVNGICQGVAFKDINGGRYYPAASIYTLPNQPNCTVQFNFGPEFDCFPEDFGNRPIPKAMCEASYCGIDGQAVHHGETLVENGQSSEKK
B3V288_______________WGAFCRDTVIKKPRRRNTNA-----SRKSGKKNMVNVNPAAKDTTLITPAPRLLDDEDKDDNPNMRICLSKIHKAKKIELSKDRLIAASTKGYRTVRATRGVVEGAWYFEINVVYLGKTGHTRLGWSTEKGDVDAPVGYDGNSYAYRDVDGNKVHKAISEPYGDGPYVEGDVIGFYINLPNGSEYxxxxxxxxxxxxGQLHDHHSNAVDAAPEVVHGSEISFFINGICQGVAFKDINGGRYYPAASFYTLPNQPNCQVQFNFGPEFDCFPEDFGNRPLPKAMSEASYCGIDRQAVNHGELLVESGQSSEKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1163		14		85	0.993533
1182		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain