SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36400

Length: 1006 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36400 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref\|NP_001119465.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97324.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97328.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana]	-	-	60%
FL-Next	sp=E3 SUMO-protein ligase SIZ1; Oryza sativa subsp. japonica (Rice).	-	-	62%
Blast2go	e3 sumo-protein ligase siz1	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of abscisic acid mediated signaling pathway	GO:0009787	Biological Process	80%
Blast2go	heat acclimation	GO:0010286	Biological Process	80%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	80%
Blast2go	response to freezing	GO:0050826	Biological Process	80%
Blast2go	developmental growth	GO:0048589	Biological Process	80%
Blast2go	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	80%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	80%
Blast2go	negative regulation of systemic acquired resistance	GO:0010113	Biological Process	80%
Blast2go	cell division	GO:0051301	Biological Process	80%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	80%
Blast2go	regulation of growth	GO:0040008	Biological Process	80%
Blast2go	detection of phosphate ion	GO:0010247	Biological Process	80%
Blast2go	protein sumoylation	GO:0016925	Biological Process	80%
Blast2go	cell growth	GO:0016049	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	SUMO ligase activity	GO:0019789	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%
Blast2go	regulation of response to water deprivation	GO:2000070	Biological Process	80%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Zinc finger, MIZ-type	IPR004181	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6L4L4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 448 aas, your sequence is shorter than subject: 335 - 875

Fln protein: SVNAS*PWLSLNSVIPESKTCCPCGSSMDSDTMIQCDEAKCGVWQHVRCVIVPEKPVESVPPEIPVQFYCDICRINHGDPFCVTLAQPLLPTKLITTPMTVDGTNPSQAVEKTFELRRTDRDLLHKPDYDLQVWCLLLNDKVPFRMHWPQHADLRVNGIAVRVTNRPAPQLLGANGRDDGPGITACSREGTNRISLQAYDSRPFVLGVRIIRRRTVEQVLNLIPNQSEGEPFEDALARVCRCVGGGGSLENADDSDNDLEVVAESVTVNLRCPMSGTRIKIAGRFKPCIHMGCFDLESFVELSQRTRKWQCPICMENYSVDNIINDPYFNLITTF

Protein Length: 336

Fln nts: AAGTGTTAATGCGTCGTGACCTTGGCTGTCACTCAATTCTGTTATACCTGAATCAAAGACGTGTTGTCCATGTGGAAGCTCAATGGACAGTGACACAATGATTCAATGTGATGAAGCCAAATGTGGAGTTTGGCAACATGTAAGATGTGTGATTGTTCCAGAAAAGCCAGTTGAAAGTGTTCCACCAGAGATTCCCGTTCAATTTTACTGTGACATCTGTCGCATCAATCATGGGGATCCGTTTTGTGTAACTTTGGCACAGCCTTTACTCCCAACTAAGCTGATTACTACACCCATGACTGTAGATGGAACAAACCCTTCACAGGCTGTGGAGAAGACATTTGAATTAAGGAGGACAGACAGAGATCTTTTGCATAAACCGGACTATGATCTTCAGGTGTGGTGCCTTCTTCTCAATGACAAAGTGCCATTTAGGATGCATTGGCCGCAACATGCAGATCTTCGAGTGAATGGAATTGCAGTTCGGGTGACAAACAGACCAGCTCCTCAATTACTTGGAGCCAATGGTCGTGATGATGGTCCAGGAATCACAGCTTGCAGTAGGGAGGGGACAAATAGAATATCATTACAAGCATATGATTCCCGGCCTTTTGTTTTAGGAGTAAGAATCATTCGACGTCGGACTGTTGAACAGGTCCTGAACCTTATCCCTAATCAGTCGGAAGGGGAGCCTTTTGAAGATGCCCTTGCTCGTGTTTGCCGTTGTGTTGGTGGTGGTGGATCTCTAGAAAATGCAGACGATAGTGACAATGACTTAGAAGTTGTAGCAGAGTCAGTAACAGTGAATCTACGGTGCCCTATGAGTGGAACTCGTATAAAAATAGCTGGGAGATTCAAACCATGTATTCATATGGGTTGTTTTGACCTAGAATCTTTTGTAGAACTTAGCCAACGTACTAGAAAGTGGCAGTGTCCTATATGCATGGAGAATTATTCAGTGGACAACATCATAAACGATCCATATTTCAACCTTATTACTACTTTT

Fln Alignment:

AllPineV4_c30489___NSVIPESKTCCPCGSSMDSDTMIQCDEAKCGVWQHVRCXXXXXXXXXXXXXXXXVQFYCDICRINHGDPFCVTLAQPLLPTKLITTPMTVDGTNPSQAVEKTFELRRTDRDLLHKPDYDLQVWCLLLNDKVPFRMHWPQHADLRVNGIAVRVTNRPAPQLLGANGRDDGPGITACSREGTNRISLQAYDSRPFVLGVRIIRRRTVEQVLNLIPNQSEGEPFEDALARVCRCVGGGGSLENADDSDNDLEVVAESVTVNLRCPMSGTRIKIAGRFKPCIHMGCFDLESFVELSQRTRKWQCPICMENYSVDNIINDPYFNLITT
Q6L4L4_______________DSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPV--FYCELCRLSRADPFWVTAGNPLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQWPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCFGVRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENA-DSDSDLEVVAESVTVNLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPYFNRITS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
384	25			75	0.996473
602	75		25		0.996474
800	80	20			0.995493
802	80	20			0.995493
803	20		80		0.995493
959	25			75	0.996473
960			25	75	0.996473
961	25	75			0.996473
963	25		75		0.996473
964			75	25	0.996473
978		33		66	0.997455
979		33	66		0.997455
981	33		66		0.997456
993		33	66		0.997476
1002	33	66			0.997476

SSRs (tot: 1)

Start position	End position	Sequence	Length
266	277	CCA CCA CCA CCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain