SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36375

Length: 975 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36375

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG1073 Hydrolases of the alpha/beta superfamily	-	-	3.0e-07	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	esterase lipase thioesterase family protein	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Protein of unknown function DUF1749	IPR013744	-	-
Sma3	BAAT/Acyl-CoA thioester hydrolase C-terminal	IPR014940	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMV8

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 38 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 203 - 266

Fln protein: SWGGLVGVLDNVGSTQLVVLCHGLRSSKDDGTLVSLASSLSSEGISTFRFDFSGNGESEGQFLYGNYWKDAEDLRVVVLYFRGKGHKVNTIIGHSKGGNAVLLYASKYQDISTAINISGRFALDRGIEGRLGKDFKHRINQYGFIDVKDKSGNVLYRVTKESLMDRLLTDTKSAVLSIPKSCRVLTKFIRTCHEDQNLIVSL*

Protein Length: 204

Fln nts: ATGGGGAGATGAAGGATTATAATTTATCTTCCGCCATCAAATCCTGCACAGGGTTCAATTCAAAGAAAATGAAGGAGAGAGTGATAGTTACAAATAATC_-_ATGGGGAGGATTGGTTGGAGTGTTGGACAATGTTGGTTCCACTCAACTGGTAGTCCTTTGCCATGGACTTAGATCCTCCAAGGATGATGGCACTTTGGTTAGCCTGGCGTCTTCATTATCAAGTGAAGGAATTAGCACCTTCCGTTTTGACTTTTCTGGAAATGGGGAAAGTGAAGGCCAGTTTTTATATGGAAACTATTGGAAGGATGCTGAAGATCTACGAGTTGTAGTTCTCTATTTTAGGGGGAAGGGACATAAAGTTAACACTATCATTGGGCACAGCAAAGGTGGCAATGCCGTGTTGCTTTATGCTTCCAAGTATCAGGATATTAGCACTGCAATCAATATCAGTGGACGATTTGCTTTGGATAGAGGCATAGAGGGTCGCTTGGGTAAAGATTTCAAGCATAGGATCAATCAATATGGATTTATTGATGTAAAGGACAAGTCTGGGAATGTGTTATACCGTGTGACAAAAGAGAGTTTAATGGATCGGTTACTTACTGATACAAAATCAGCAGTACTTTCTATtCCTAAAAGTTGCAGGgTCTtGAcaAAGtTCATAcGaaCCTGTCATGAAGATCAAAATCTCATTGTGTCTTTGTGACCTTTTCTGTGTCTGGAATCTGTGAGAAAATTGCGGTCCGTTTGAAGAGGGAATAAAGTTTGGATTCTCTCAAAATCCATTTATATTATTTATTATTCAATCACTTTTATAACCTTATTAGCCATAATATGCAGCCTAATATAAGATTACTTAGATCGTCAATTGGCATTCTCAGATAGTGATAGAATCATGTGCTTATGTCTCACCCTGCCCTTTCTTCCAGATCAATGACTTCAGATAATCCAGTTCAATGTCCCCCTTCTGCAAAG

Fln Alignment:

AllPineV4_c30410___LVGVLDNVGSTQLVVLCHGLRSSKDDGTXXXXXXXXXXEGISTFRFDFSGNGESEGQFLYGNYWKDAEDLRVVVLYFRGKGHKVNTIIGHSKGGNAVLLYASKYQDISTAINISGRFALDRGIEGRLGKDFKHRINQYGFIDVKDKSGNVLYRVTKESLMDRLLTDTKSAVLSIPKSCRVLT
A9NMV8_______________LVGVLDDTGSRQLVVLCHGFRSSKESGTLVNLAAALVSEGISAFRFDFSGNGESEGQFLYGGYWKEVEDLHTVILYFSGKERQMNTIIGHSKGGNVVLLYASKYHDISTVINISGRYALDKGIEDRMGKDFERRINKDGFIDVKNSSGNVEYRVTKEGLMDRLQTDMKSAALSIPKNCRVLT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
294	83		16		0.994512
397	16		83		0.994512
399	16	83			0.994512
400			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain