SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36211

Length: 555 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene36211
GTTTGGGGCCGGAACTGGCAGTGGCGGCAGCAGCAGCAGGGTGTTCATACATATCTTCACAGTTTCATTTGCCTTTGCAGCGGCATTCACACAATTGTCAAGTACTACAGCGATTGTCATTTCTTTCTCGTCCTCGTTCGCTGGCCATTGGAAAGCCAGCAGTTCCTGTTGCTTCATTAATGCAGATGGCTGCTACAGAGAAGGATCAGTCTGGTGTAGTCACTGAGAGGGAGTATGATCGTCAGGCAAAGTTGCTTCAGGAATTTTATGAAATTCCAAGCATTGAGAAAGCATGGGTTTCTCAGTCTGGCTTATGTGATGGCATGCAAACAATGATATCTATGAGCCAGATGAATATTCCAGCAATAATAAGAGATATTTGTTCCTCCGTCAGTGCATGGTCCTTTGTATACAGATGGATGGTTTGAAGGTGTTTCATGGAGTTCAGATGAGACTTGTATAGCTTATATTGCAGAGGAACCAGCAACTCCTCAACCTATATTTACCAGTTCTGGGTGCAAGCCAGTAAGTTCACTGGTTGTTCCTTCACACATT

Ace file of the UniGene sp_v2.0_unigene36211

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acylamino-acid-releasing enzyme, putative n=1 Tax=Ricinus communis RepID=B9RTG2_RICCO	-	-	3.0e-13	62%
FL-Next	tr=Acylamino-acid-releasing enzyme, putative; Ricinus communis (Castor bean).	-	-	0.0	62%
Blast2go	acylamino-acid-releasing enzyme	-	-	6.07396e-15	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	6.07396e-15	73%
Blast2go	serine-type aminopeptidase activity	GO:0070009	Molecular Function	6.07396e-15	73%
Blast2go	vacuole	GO:0005773	Cellular Component	6.07396e-15	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.07396e-15	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-
Sma3	Peptidase S9, serine active site	IPR002471	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9RTG2

Fln msg: Distance to subject end: 573 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 61 - 771

Fln protein: EIFVPPSVHGPLYTDGWFEGVSWSSDETCIAYIAEEPATPQPIFTSSGCKPVSSLVVPSHI

Protein Length: 62

Fln nts: GTTTGGGGCCGGAACTGGCAGTGGCGGCAGCAGCAGCAGGGTGTTCATACATATCTTCACAGTTTCATTTGCCTTTGCAGCGGCATTCACACAATTGTCAAGTACTACAGCGATTGTCATTTCTTTCTCGTCCTCGTTCGCTGGCCATTGGAAAGCCAGCAGTTCCTGTTGCTTCATTAATGCAGATGGCTGCTACAGAGAAGGATCAGTCTGGTGTAGTCACTGAGAGGGAGTATGATCGTCAGGCAAAGTTGCTTCAGGAATTTTATGAAATTCCAAGCATTGAGAAAGCATGGGTTTCTCAGTCTGGCTTATGTGATGGCATGCAAACAATGATATCTATGAGCCAGATGAATATTCCAGCAATAATAAGAGATATTTGTTCCTCCGTCAGTGCATGGTCCTTTGTATACAGATGGATGGTTTGAAGGTGTTTCATGGAGTTCAGATGAGACTTGTATAGCTTATATTGCAGAGGAACCAGCAACTCCTCAACCTATATTTACCAGTTCTGGGTGCAAGCCAGTAAGTTCACTGGTTGTTCCTTCACACATT

Fln Alignment:

AllPineV4_c29845___EIFVPPSVHGPLYTDGWFEGVSWSSDETCIAYIAEEPATPQPIFTSSGCK
B9RTG2_______________EFHVPQSVHGSVYTDGWFEGISWNSDETLVAFVAEEPSPPKPVFSGLGYK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
197		66		33	1.0
234	25		75		0.996473
242	20		80		0.995493
350	85		14		0.993533
372	50			50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
27	39	GCA GCA GCA GCA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain