SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36174

Length: 881 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene36174

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative receptor ser/thr protein [Oryza sativa Japonica Group] gb\|ABF95119.1\| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	leucine-rich repeat family protein protein kinase family protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLL8

Fln msg: Separated hits, possible frame ERROR between 396 and 531, Distance to subject end: 39 aas,

Fln protein: MSNNGLHKHLFGEMRNCLNWENRVDIIVGTARGLSYLHEDSNMRIIHRDIKCANILLDDRFHPKIADFGMARCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKCVDVTVPHPMSILLEWAWNSYKQGNVLDIVDPKLEGQYPREQGLRVITIALLCTQGSWGQRSAMSQVVAMLTTDIEIRVQPTQ

Protein Length: 238

Fln nts: TACTCGGATGCTGGTCAGGAGGCTCACTTCTGACCAGCATCCGAGTAGACGAACAAGATTGCGGTGACGGACGCTGGTCAGGAGGCTCACTTCTGTCCGGAACTCCTCCGCGCCTTGAGTATTCTCGGATGTTGCACGCGTGGGAACCAACGCTTGCTGGTTTATGAATTT_-_ATGTCAAATAACGGTCTTCACAAGCATTTGTTTGGAGAGATGCGAAATTGTCTAAACTGGGAAAACCGTGTAGACATTATAGTGGGCACAGCTCGAGGTCTGTCATATCTGCACGAGGATTCGAACATGCGCATTATACATAGAGATATCAAATGCGCAAATATACTGTTAGATGACAGATTTCACCCTAAAATAGCAGATTTTGGAATGGCAAGATGTCTTCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCTACACCGCACCAGAGTATGCCGTTCATGGGCAATTGACGGAAAAGGCAGACGTTTACAGTTATGGGATCGTGGTTCTCGAGATTGTGAGTGGGAGAAAGTGTGTAGATGTAACAGTGCCACACCCTATGAGCATTCTTTTGGAATGGGCTTGGAATAGCTATAAACAGGGTAATGTTTTGGATATTGTTGATCCAAAATTAGAAGGACAGTACCCAAGAGAACAGGGATTAAGGGTGATCACAATTGCACTTCTTTGCACACAAGGTTCTTGGGGACAGCGTTCGGCGATGTCACAGGTTGTCGCCATGTTAACTACCGATATAGAGATTCGTGTTCAGCCTACACAA

Fln Alignment:

AllPineV4_c29745___MSNNGLHKHLFGEMRNCLNWENRVDIIVGTARGLSYLHEDSNMRIIHRDIKCANILLDDRFHPKIADFGMARCLPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKCVDVTVPHPMSILLEWAWNSYKQGNVLDIVDPKLEGQYPREQGLRVITIALLCTQGSWGQRSAMSQVVAMLTTDIEIRVQPTQ
B8LLL8_______________MSQNSLHKHLFGEIQNVLSWEKRLGIIVGTARGLTYLHEDSNVRIIHRDIKCGNILLDDRFHPKIADFGLARFFPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGYTAPEYAVHGQLTEKADVYSYGIVVLEIVSGRKSVNARLDASMQLLLEWAWNQFQQDQVLDIVDSSLEGQYPREQVLRVIRIALLCTQGSWALRPAMSEVVSMLTNNSEITVQPTQ

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
387	25		75		0.996479
423	80		20		0.995493
527			83	16	0.994512
534	16		83		0.994512
559	25			75	0.996473
583	75			25	0.996473
644	25		75		0.996473
650		33	66		0.997452
651			33	66	0.997452
654		66	33		0.997452
655	66		33		0.997452
656		66	33		0.997453
658	33	66			0.997453
665	66	33			0.997452
694	33		66		0.997452
731	66	33			0.997461
740	66		33		0.997452
743	66		33		0.997452
763		33	66		0.997453
773			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain