SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36131

Length: 816 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene36131 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] emb\|CAB40768.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB78375.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABM06003.1\| At4g13330 [Arabidopsis	-	-	1.0e-36	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	s-adenosylmethionine-dependent methyltransferase domain-containing protein	-	-	0.0	66%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
563	62	37			1.0
572			87	12	0.992554
575	12			87	0.992554
576		87	12		0.992554
577		87		12	0.992554
578	87		12		0.992554
579	12	87			0.992554
588	87		12		0.992554
589	87			12	0.992554
590		12	87		0.992554
594			87	12	0.992554
595	12		87		0.992554
596	87	12			0.992554
602	85	14			0.993534
604	85		14		0.993534
605		14		85	0.993533
606		14	85		0.993533
607	14		85		0.993533
608	14	85			0.993533
615			14	85	0.993533
657	75		25		0.99649
658	75			25	0.996486
659	75		25		0.996486
661		33		66	0.997452
664	75	25			0.99649
665	75	25			0.99649
668			20	80	0.995496
671		20	80		0.995495
673		20		80	0.995495
676	80	20			0.995497
677	80		20		0.995497

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain