SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene36108

Length: 511 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene36108
TGGTTCATCTTCTCGAATGGACCTGGCATCTCTATGAGAAAGAAAGGCAGCTAGAATTGATGGACCCTGAGATAGAATCAACATGCTCAAAAGAAGAAGTCCTCAGAGTGATTAAAGTAGCCCTTCTTTGCACCCAAGCTGTGCCTACAATGCGTCCATCGATGTCTCGAGTGGTAGCAATGCTGACTGGTGACGTAGAGATCAATCCTCCTGCTTCTCGCCCTCGTTACATTAAAGATTTGCAATATAACGCTGCCATTGCCGGAAGTGGCAGTACATCTGTCGTAGCAACACCACCATTGTACAACAGCGTAGAGAGCTCATCAATTTAAGCCATGACAGCTTGGCCTCGTCTTCAGCAGATGGAGAAATGTATCTCCATCAAAGATACATAGTGATAGAAAAGAAGGCCGATGAGAGCTGACTTGAGCATTAAGATTATGAAACGTCAGACTGTTTGCTGGGAATTGTCTTTCATAGCTTTAAAGCTCATGGCATTTCTATTCTGTTA

Ace file of the UniGene sp_v2.0_unigene36108 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative (EC:2.7.11.25)	-	-	3.0e-18	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g56130-like	-	-	1.40237e-22	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 31 aas, putative chimeric sequence, your sequence is shorter than subject: 110 - 402

Fln protein: VHLLEWTWHLYEKERQLELMDPEIESTCSKEEVLRVIKVALLCTQAVPTMRPSMSRVVAMLTGDVEINPPASRPRYIKDLQYNAAIAGSGSTSVVATPPLYNSVESSSI*

Protein Length: 111

Fln nts: TGGTTCATCTTCTCGAATGGACCTGGCATCTCTATGAGAAAGAAAGGCAGCTAGAATTGATGGACCCTGAGATAGAATCAACATGCTCAAAAGAAGAAGTCCTCAGAGTGATTAAAGTAGCCCTTCTTTGCACCCAAGCTGTGCCTACAATGCGTCCATCGATGTCTCGAGTGGTAGCAATGCTGACTGGTGACGTAGAGATCAATCCTCCTGCTTCTCGCCCTCGTTACATTAAAGATTTGCAATATAACGCTGCCATTGCCGGAAGTGGCAGTACATCTGTCGTAGCAACACCACCATTGTACAACAGCGTAGAGAGCTCATCAATTTAA___GCCATGACAGCTTGGCCTCGTCTTCAGCAGATGGAGAAATGTATCTCCATCAAAGATACATAGTGATAGAAAAGAAGGCCGATGAGAGCTGACTTGAGCATTAAGATTATGAAACGTCAGACTGTTTGCTGGGAATTGTCTTTCATAGCTTTAAAGCTCATGGCATTTCTATTCTGTTA

Fln Alignment:

AllPineV4_c29461___LLEWTWHLYEKERQLELMDPEIESTCSKEEVLRVIKVALLCTQAVPTMRPSMSRVVAMLTGDVEINPP-ASRPRYIKDLQYNAAIAGS
A9NWR4_______________LLEWTWQLREESRLLDIVDPRLEEY-PKEEVLRFIKVALLCTQAASNFRPSMSQVVAMLSKEININENLLSRPGFISDFKNLKVSAGT

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
289		50	50		1.0
320	50		50		1.0
400		50		50	1.0
410		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain