SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35781

Length: 678 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene35781 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin-binding transcription activator 2 [Arabidopsis thaliana] ref\|NP_001032135.1\| calmodulin-binding transcription activator 2 [Arabidopsis thaliana] sp\|Q6NPP4.1\|CMTA2_ARATH RecName: Full=Calmodulin-binding transcription activator 2; AltName: Full=E	-	-	3.0e-23	50%
FL-Next	sp=Calmodulin-binding transcription activator 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	calmodulin-binding transcription activator 4-like	-	-	1.95136e-32	63%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	CG-1 DNA-binding domain	IPR005559	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	G %	T %	Probability
453	85	14		0.993533
545	87	12		0.992554
634	14	85		0.993533
652	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain