SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35770

Length: 808 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene35770 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin-protein ligase 1 [Arabidopsis thaliana]	-	-	48%
FL-Next	sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	48%
Blast2go	ubiquitin-protein ligase 1	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	66%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	66%
Blast2go	membrane	GO:0016020	Cellular Component	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%
Blast2go	cytosol	GO:0005829	Cellular Component	66%
Blast2go	mitochondrion	GO:0005739	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
435	90		10		0.90298
500	20		80		0.999996
520	88	11			0.923564
534	88	11			0.923565
633	14			85	0.993533
640	16		83		0.994512
656		80		20	0.995493
657		80	20		0.995493
660	80		20		0.995493
664			20	80	0.995493
668	80		20		0.995493
674	80		20		0.995493
675	80		20		0.995493
676		80		20	0.995493
678	80	20			0.995493
679	60	40			1.0
680		20	80		0.995493
682	60	20		20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain