SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35730

Length: 693 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35730

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vesicular-fusion protein nsf, putative n=1 Tax=Ricinus communis RepID=B9RZA0_RICCO	-	-	63%
FL-Next	sp=Vesicle-fusing ATPase; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	vesicle-fusing atpase-like	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	72%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
259		11	88		0.923564
261		88		11	0.923564
262	88	11			0.923564
263		88	11		0.923564
269	88			11	0.923565
270	88		11		0.923576
271	88		11		0.923576
276			88	11	0.923567
280	88	11			0.92357
282		11		88	0.923567
283	11		88		0.923584
316		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain