SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35346

Length: 1010 nt

Origin of reads: Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene35346 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pyridoxal kinase [Glycine max]	-	-	1.00053e-42	71%
FL-Next	sp=Pyridoxal kinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	pyridoxal kinase	-	-	0.0	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyridoxal kinase.	EC:2.7.1.35	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Vitamin B6 metabolism	00750		0.0	79%
Blast2go	Metabolic pathways	01100		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	trichoblast differentiation	GO:0010054	Biological Process	79%
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	79%
Blast2go	pyridoxal 5'-phosphate salvage	GO:0009443	Biological Process	79%
Blast2go	pyridoxal kinase activity	GO:0008478	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase	IPR004625	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-
Sma3	Phosphomethylpyrimidine kinase type-1	IPR013749	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
641	20			80	0.995497
642	20		80		0.995495
643			80	20	0.995495
644	80		20		0.995495
712		60		40	1.0
855		10		90	0.90298
856	90		10		0.90298
859	88		11		0.923564
871		57		42	1.0
916			66	33	1.0
917		66	33		1.0
921		66	33		1.0
923		33		66	1.0
925		66	33		1.0
928	33			66	1.0
929	33	66			1.0
930			33	66	1.0
931	66		33		1.0
934	33			66	1.0
936		66	33		1.0
938		16		83	0.994512
994	66	33			0.997476
996			66	33	0.997476
997	33			66	0.997476
998	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain