SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35282

Length: 828 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene35282

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cysteine-rich receptor-like protein kinase 29 [Arabidopsis thaliana] sp\|Q8S9L6.1\|CRK29_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 29; Short=Cysteine-rich RLK29; Flags: Precursor gb\|AAL75897.1\| AT4g21410/T6K22_140 [Arabidopsis thaliana]	-	-	2.00386e-43	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	cysteine-rich receptor-like protein kinase 10-like	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Transcription regulator LuxR, C-terminal	IPR000792	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Allergen V5/Tpx-1-related	IPR001283	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Ves allergen	IPR002413	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	CAP domain	IPR014044	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Aconitase family, 4Fe-4S cluster binding site	IPR018136	-	-
Sma3	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	IPR018184	-	-
Sma3	Allergen V5/Tpx-1-related, conserved site	IPR018244	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	MULE transposase domain	IPR018289	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
391		83		16	0.994512
404			16	83	0.994513
406			16	83	0.994514
415		60	40		1.0
438	16		83		0.994512
534		75	25		0.996473
551	75		25		0.996473
590		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain