SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene35002

Length: 481 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene35002
ATGGTTATTTGCACATAGAAAGAAACCGAGCTGCCGGCACCAGTTTGTTCATCAATTCACTGTAATATCTTCGGCATTCGACAGATCCTAATCCGAAGGCCAGGCAATTATGAAGTTTGTGCCTATACTTGCTTTCTACATTTTGCTACTATGTAGTTCTGTACACAATGTAAGATGCCTAAGGGAATCATCTGATGATAGCTCAAAGAAAATAAATTTCGTGAACGGGAAGCAACCGATGACATCTTCCATTGCCCACCTTAGATGAGGATGCATTGCTAAACACAAAATGTCCTCAGAATGTGGAGTTGAGGTGGCAGACTGAAGTAAGCTCAAGCATTTATGCAACACCTTTAATTGCTGATATTAACAGGTTGGCCGGCATTCCATAAGTCAACTGTCCATGCCAGTCCACTACTATATGATATTGATAAGGATGGGATCAGAGAAGTAGCTTTAGCAACGTATAATGGTGAAGTTA

Ace file of the UniGene sp_v2.0_unigene35002

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	defective in exine formation [Arabidopsis thaliana]	-	-	2.0e-12	40%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	43%
Blast2go	defective in exine formation protein	-	-	6.08211e-16	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen wall assembly	GO:0010208	Biological Process	6.08211e-16	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	FG-GAP	IPR013517	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9IG47

Fln msg: Distance to subject end: 556 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 93 - 701

Fln protein: LKENKFREREATDDIFHCPP*MRMHC*TQNVLRMWS*GGRLK*AQAFMQHL*LLILTGWPAFHKSTVHASPLLYDIDKDGIREVALATYNGEV

Protein Length: 94

Fln nts: ATGGTTATTTGCACATAGAAAGAAACCGAGCTGCCGGCACCAGTTTGTTCATCAATTCACTGTAATATCTTCGGCATTCGACAGATCCTAATCCGAAGGCCAGGCAATTATGAAGTTTGTGCCTATACTTGCTTTCTACATTTTGCTACTATGTAGTTCTGTACACAATGTAAGATGCCTAAGGGAATCATCTGATGATAGCTCAAAGAAAATAAATTTCGTGAACGGGAAGCAACCGATGACATCTTCCATTGCCCACCTTAGATGAGGATGCATTGCTAAACACAAAATGTCCTCAGAATGTGGAGTTGAGGTGGCAGACTGAAGTAAGCTCAAGCATTTATGCAACACCTTTAATTGCTGATATTAACAGGTTGGCCGGCATTCCATAAGTCAACTGTCCATGCCAGTCCACTACTATATGATATTGATAAGGATGGGATCAGAGAAGTAGCTTTAGCAACGTATAATGGTGAAGTTA

Fln Alignment:

AllPineV4_c25552___KENKFREREATDDIF-------------HCPP*MRMHC*TQNVLRMWS*--------GGRLK*A-QAFMQHL*LLI------LTGWPAFHKSTVHASPLLYDIDKDGIREVALATYNGEV
B9IG47_______________KKNKFRDREATDDALGYPDIDENALLNTQCPKNLELRWQTEVSSSVYATPLIADINSDGKLDVVVPSFVHYLEALEGSDGDKIPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain