SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34859

Length: 225 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene34859
AATGTAGCATATCAGGGGATATTCTTGCTATGCATCCACCAGATCCAATAGCTGCAGATATTCTAAGGAAAGAGCCAGAGCAGGATAATCTTGTACGGTTGAAAATCACTCCCATTGACACGTCTTCTTGAAACAGGTGGTTGGCTTTGATATGGTGGATGATGAAAGTAAACCTGAAAGGCGTCCCACAAAGCACATGCCAACCCCAGCTCAGTGGACAAATGA

Ace file of the UniGene sp_v2.0_unigene34859

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP deaminase n=2 Tax=Arabidopsis RepID=AMPD_ARATH	-	-	4.0e-14	85%
FL-Next	sp=AMP deaminase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	amp deaminase	-	-	5.03647e-17	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	AMP deaminase.	EC:3.5.4.6	-	5.03647e-17	89%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	5.03647e-17	89%
Blast2go	Biosynthesis of plant hormones	01070	5.03647e-17	89%
Blast2go	Metabolic pathways	01100	5.03647e-17	89%
Blast2go	Biosynthesis of secondary metabolites	01110	5.03647e-17	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	5.03647e-17	89%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	5.03647e-17	89%
Blast2go	AMP deaminase activity	GO:0003876	Molecular Function	5.03647e-17	89%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	5.03647e-17	89%
Blast2go	cytosol	GO:0005829	Cellular Component	5.03647e-17	89%
Blast2go	microsome	GO:0005792	Cellular Component	5.03647e-17	89%
Blast2go	nucleus	GO:0005634	Cellular Component	5.03647e-17	89%

Source	InterPros	Term	Type	Identity
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	AMP deaminase	IPR006329	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O80452

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 216 aas, your sequence is shorter than subject: 74 - 839

Fln protein: CSISGDILAMHPPDPIAADILRKEPEQDNLVRxxxxSH*HVFLKQVVGFDMVDDESKPERRPTKHMPTPAQWTN

Protein Length: 75

Fln nts: AATGTAGCATATCAGGGGATATTCTTGCTATGCATCCACCAGATCCAATAGCTGCAGATATTCTAAGGAAAGAGCCAGAGCAGGATAATCTTGTACGGxxxxxxxxxxxxTCCCATTGACACGTCTTCTTGAAACAGGTGGTTGGCTTTGATATGGTGGATGATGAAAGTAAACCTGAAAGGCGTCCCACAAAGCACATGCCAACCCCAGCTCAGTGGACAAATGA

Fln Alignment:

AllPineV4_c25138___SISGDILAMHPPDPIAADILRKEPEQDNLVRLKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxENHSH*HVFLKQVVGFDMVDDESKPERRPTKHMPTPAQWTN
O80452_______________SVSGDLHGVQP-DPIAADILRKEPEQETFVRLNVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSHPQLHVFLKQVVGFDLVDDESKPERRPTKHMPTPAQWTN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain