SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34589

Length: 462 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene34589
GCGAACACTAATATCCAGGGATGTAATCACGTGCATCCAATGTAGGCCTCTTTATTGCGTGGAAGCTGTCATCGATAGTAAGTATCATGTGCACTAATGTGGATTCAAAGCGAGTCTTTTATAACTTAAACGATATGCATACTTGTCTAATGATTGGTTAAAGCGATGTTTTGCGATCATATTGTGTTTATATATAAATATTTTTTGCTGCTTTGTCTTGTGCAGCTCTTGCCAGAGGATCGCGTTGCTGCATTATTTGTTGTTGGACTATCGCTTTCAGATGATGGTGAAAGTGATGAACAAGTTGTTCTTGTGAGCCACAGTGGCATGGTGAACAGAATTATGGTTCGAGACATTTCTATCCAGTCGAGAACTGCCAAGGGTGTGAGACTAATGAGACTAGATTATGGTGGCAAGATTCAGTCAGTTTCTGTAGTAGGTCCTTCAGAAATTCACAGCGAT

Ace file of the UniGene sp_v2.0_unigene34589

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA gyrase subunit A [Arabidopsis thaliana] sp\|Q9CAF6.2\|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gb\|AEE74943.1\| DNA gyrase subunit A [Arabidopsis thaliana]	-	-	2.0e-20	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	dna gyrase subunit a	-	-	3.19216e-41	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA topoisomerase activity	GO:0003916	Molecular Function	3.19216e-41	84%
Blast2go	nucleoid	GO:0009295	Cellular Component	3.19216e-41	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.19216e-41	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	3.19216e-41	84%

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ8

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 154 - 183

Fln protein: ANTNIQGCNHVHPM*ASLLRGSCHR**VSCALMWIQSESFIT*TICILV**LVKAMFCDHIVFIYKYFLLLCLVQLLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRDISIQSRTAKGVRLMRLDYGGKIQSVSVVGPSEIHSD

Protein Length: 155

Fln nts: GCGAACACTAATATCCAGGGATGTAATCACGTGCATCCAATGTAGGCCTCTTTATTGCGTGGAAGCTGTCATCGATAGTAAGTATCATGTGCACTAATGTGGATTCAAAGCGAGTCTTTTATAACTTAAACGATATGCATACTTGTCTAATGATTGGTTAAAGCGATGTTTTGCGATCATATTGTGTTTATATATAAATATTTTTTGCTGCTTTGTCTTGTGCAGCTCTTGCCAGAGGATCGCGTTGCTGCATTATTTGTTGTTGGACTATCGCTTTCAGATGATGGTGAAAGTGATGAACAAGTTGTTCTTGTGAGCCACAGTGGCATGGTGAACAGAATTATGGTTCGAGACATTTCTATCCAGTCGAGAACTGCCAAGGGTGTGAGACTAATGAGACTAGATTATGGTGGCAAGATTCAGTCAGTTTCTGTAGTAGGTCCTTCAGAAATTCACAGCGAT

Fln Alignment:

AllPineV4_c24352___QLLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRDISIQSRTAKGVRLMRLDYGGKIQSVSVVGPSEIHSD
D5ABZ8_______________KLLPEDRVAALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKGVRLMRLEHGGKIQSVSVVGPSEVQSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain