SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34034

Length: 518 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene34034
CGTCGTGACCTTGGCTGTCACTCAGCTTCAGCCGGGTAGCCCGCAGCGGGCTGATCTAGAGATTCAGATTGTTAGGGATTACAAGGTTCATCTTGGGAGGTACTGCCACATGGAGTTACAGAGGCGCCAGTGGGCGAGGCACTTGGAGACTCCCCACTGCGATAAGCTCAGGCAGTTCGAAACTGTTAGATGAGCTGGTACGAACAATAGTATCAAGTTTATAGGTATCAATTTTACAGATTGAAGATGGCTATACATTATAGTTCTATTTTGTCCACAGATTGAAGACATAATTTCTATGATAAGAATAAATTGACGCAATCTACCGTTGCATCCACTTGCTCTTTGATATGACTATAACAAGAGTCGTGACGAAATGGGAGCTGGTTATTGAATTTTGGAGAAACTCATCAAAGGCAGTGATCTATCCATTTTTACCTTATAATGTAATTGAGGGCATTTGCTCTCGAAACACAGAACTATGGTAGAGGGATATCCATGTCTTGTTGAATCTCGAA

Ace file of the UniGene sp_v2.0_unigene34034

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DnaJ/Hsp40 domain-containing protein [Arabidopsis thaliana] ref\|NP_850714.1\| DnaJ/Hsp40 domain-containing protein [Arabidopsis thaliana] emb\|CAB68140.1\| dnaJ-like protein [Arabidopsis thaliana] dbj\|BAH19912.1\| AT3G57340 [Arabidopsis thaliana] gb\|AEE79643.	-	-	8.0e-06	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	chaperone protein dnaj 49-like	-	-	3.83959e-28	73%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Domain of unknown function DUF1977, DnaJ-like	IPR015399	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV01

Fln msg: your sequence is shorter than subject: 64 - 361

Fln protein: VVTLAVTQLQPGSPQRADLEIQIVRDYKVHLGRYCHMELQRRQWARHLETPHCDKLRQFETVR*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTCAGCCGGGTAGCCCGCAGCGGGCTGATCTAGAGATTCAGATTGTTAGGGATTACAAGGTTCATCTTGGGAGGTACTGCCACATGGAGTTACAGAGGCGCCAGTGGGCGAGGCACTTGGAGACTCCCCACTGCGATAAGCTCAGGCAGTTCGAAACTGTTAGATGA___GCTGGTACGAACAATAGTATCAAGTTTATAGGTATCAATTTTACAGATTGAAGATGGCTATACATTATAGTTCTATTTTGTCCACAGATTGAAGACATAATTTCTATGATAAGAATAAATTGACGCAATCTACCGTTGCATCCACTTGCTCTTTGATATGACTATAACAAGAGTCGTGACGAAATGGGAGCTGGTTATTGAATTTTGGAGAAACTCATCAAAGGCAGTGATCTATCCATTTTTACCTTATAATGTAATTGAGGGCATTTGCTCTCGAAACACAGAACTATGGTAGAGGGATATCCATGTCTTGTTGAATCTCGAA

Fln Alignment:

AllPineV4_c22771___QLQPGSPQRADLEIQIVRDYKVHLGRYCHMELQRRQWARHLETPHCDKLRQFETVR
A9NV01_______________ELQPGSPQRADLELQVIRDYKGYLGRYCHLELQRRQWARHLETPHCDKLRQFETVR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
378	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain