SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene34009

Length: 1039 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene34009 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate kinase isozyme A, chloroplastic n=3 Tax=Ricinus communis RepID=KPYA_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	pyruvate kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.4-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	pyruvate kinase activity	GO:0004743	Molecular Function	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Pyruvate kinase, barrel	IPR015793	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	Pyruvate kinase, beta-barrel insert domain	IPR015806	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
881	25			75	0.996473
923		33		66	0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain