SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33922

Length: 513 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene33922
AAGTGGCAGAGAGCGATCACAACAGAGTGATCGAAATGCACAATTATTTAACGAGCGTGTACGAAGAAGGCGACGCGCGTTCGGCTCTCATAGCCATGGTTCAATCCCTGCATCATGCCAAATTGGAACAGAGTCTTCACCCAACTGTCCACAGCCCACAAGGGTGCTCGAATAGGGGTATTTTACTGTGGGCCGCCTACTCTTCAAAACAATTACGTTCACTTTCGCAGCAATTTACCCATAACTCAAGCACTCGTTTTGAATTTCACAAGGAGAATTTCTAGCAGAATGGAATTTTTTCCAGATTGTCATTCGTGGGGACACCATCAGTGTGTCTCCGGGTTACAACCACATCCATCCATTTTCCAGTGCTACGAGAAGAGGATGGTATATGACCACTTGAGTTTGAAATATATTTTCACATACATGTATTCATGTAATAATCCACGATGGAGGCTGTTATTTTGTTGCATATTTCTATGTCAATGCATGGGAGGCGCTCTCGGTTTTAAA

Ace file of the UniGene sp_v2.0_unigene33922 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative respiratory burst oxidase [Oryza sativa Japonica Group]	-	-	2.0e-18	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	respiratory burst oxidase	-	-	4.18225e-22	58%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	NADPH oxidase Respiratory burst	IPR013623	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: your sequence is shorter than subject: 94 - 358

Fln protein: VAESDHNRVIEMHNYLTSVYEEGDARSALIAMVQSLHHAKLEQSLHPTVHSPQGCSNRGILLWAAYSSKQLRSLSQQFTHNSSTRFEFHKENF*

Protein Length: 95

Fln nts: AAGTGGCAGAGAGCGATCACAACAGAGTGATCGAAATGCACAATTATTTAACGAGCGTGTACGAAGAAGGCGACGCGCGTTCGGCTCTCATAGCCATGGTTCAATCCCTGCATCATGCCAAATTGGAACAGAGTCTTCACCCAACTGTCCACAGCCCACAAGGGTGCTCGAATAGGGGTATTTTACTGTGGGCCGCCTACTCTTCAAAACAATTACGTTCACTTTCGCAGCAATTTACCCATAACTCAAGCACTCGTTTTGAATTTCACAAGGAGAATTTCTAG___CAGAATGGAATTTTTTCCAGATTGTCATTCGTGGGGACACCATCAGTGTGTCTCCGGGTTACAACCACATCCATCCATTTTCCAGTGCTACGAGAAGAGGATGGTATATGACCACTTGAGTTTGAAATATATTTTCACATACATGTATTCATGTAATAATCCACGATGGAGGCTGTTATTTTGTTGCATATTTCTATGTCAATGCATGGGAGGCGCTCTCGGTTTTAAA

Fln Alignment:

AllPineV4_c22421___VAESDHNRVIEMHNYLTSVYEEGDARSALIAMVQSLHHAKLEQSLHPTVHSPQGCSNRGILLWA----------------------AYSSKQLRSLSQQFTHNSSTRFEFHKENF
D5ABF5_______________VAEIDQKGIIELHNYCTSVYEEGDARSALIAMLQALNHAKHGVDI---VSGTRVCTHFAKPNWRNVFKSITLKHKDSRVGVFYCGPAALTDDLRQLSLDFTRKTSTRFDFHKENF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
113		75	25		0.996473
141	50			50	1.0
306	75	25			0.996473
313			33	66	0.997459
319		33	33	33	0.997749
320			66	33	0.997461
322	66	33			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain