SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33907

Length: 481 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene33907
GAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATCCAAAACCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTCGGCAGAATTGGGTGGTATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTTGATCTGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGG

Ace file of the UniGene sp_v2.0_unigene33907 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	defective in exine formation [Arabidopsis thaliana]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	80%
Blast2go	defective in exine formation protein	-	-	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen wall assembly	GO:0010208	Biological Process	0.0	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	FG-GAP	IPR013517	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7THB6

Fln msg: Distance to subject end: 360 aas, your sequence is shorter than subject: 159 - 847

Fln protein: DGEDGLTDEYAYDYDDYVDESAWGDEDFAEAQHPKPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHSAELGGIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVDLDGDGYLDILVGTSFGFFYVLDHH

Protein Length: 160

Fln nts: GAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATCCAAAACCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTCGGCAGAATTGGGTGGTATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTTGATCTGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGG

Fln Alignment:

AllPineV4_c22350___SAWGDEDFAEAQHPKPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHSAELGGIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVDLDGDGYLDILVGTSFGFFYVLDHH
D7THB6_______________SMWGDEGWTEGQHEKMEDYVNIDSHILCTPVIADIDNDGVSEMVVAVSYFFDHEYYDNQEHLKELGDIDIGKYVAGAIVVFNLDTKQVKWTTPLDLSTDAGNFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
272	85		14		0.993537

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain