SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33882

Length: 226 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene33882
ATGGGGAACTCCTGCACAGTTTGAAAGTCGGGTGAGCAGGCGGTCAGTGGATGAATCCACCACATTGTCGATCATAAAAGGAACCAGCAGACAGAGTTGCTGTAAGGTTCGCGAAGCCCACAAATGGCGTCGGTTGCAGCAATTTCTCGCAATCGCATCGCCTGTGCTTTGAAACAACGGCTCCGCGGGTTTCGATCCAGTGCTTATGGGTCATCCACAAGGCACA

Ace file of the UniGene sp_v2.0_unigene33882

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	unknown [Picea sitchensis]	-	-	4.75926e-11	97%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	E3 binding	IPR004167	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX9

Fln msg: Distance to subject end: 495 aas, your sequence is shorter than subject: 34 - 529

Fln protein: MASVAAISRNRIACALKQRLRGFRSSAYGSSTRH

Protein Length: 35

Fln nts: ATGGGGAACTCCTGCACAGTTTGAAAGTCGGGTGAGCAGGCGGTCAGTGGATGAATCCACCACATTGTCGATCATAAAAGGAACCAGCAGACAGAGTTGCTGTAAGGTTCGCGAAGCCCACAA_-_ATGGCGTCGGTTGCAGCAATTTCTCGCAATCGCATCGCCTGTGCTTTGAAACAACGGCTCCGCGGGTTTCGATCCAGTGCTTATGGGTCATCCACAAGGCACA

Fln Alignment:

AllPineV4_c22264___MASVAAISRNRIACALKQRLRGFRSSAYGSSTRH
B8LPX9_______________MASVAAISRDRLACALKQRLRGFRSCAYGSSTRH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
100	22			77	0.999999
104			22	77	0.999999
106			22	77	0.999999
142	88			11	0.923564
148		10		90	0.903503

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain