SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33443

Length: 858 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33443

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-adaptin-like protein A n=3 Tax=Arabidopsis RepID=APBLA_ARATH	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	beta-adaptin-like protein a	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Beta-adaptin appendage, C-terminal subdomain	IPR015151	-	-
Sma3	Adaptor protein complex, beta subunit	IPR016342	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNI5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 504 aas, your sequence is shorter than subject: 285 - 903

Fln protein: VEEPSEPRGSQNQCT*WEKYGIT*EHQWLLLSLHSCYCPEVPVALKALLLHDPDAQVVANCLSSLQEILTLEGNSSEEASREKELLLSKPVIYALLNRIREFSEWAQCLILDLVVKYIPSESSEIFDIMNLLEDRLQHANSAVVLATINLFLHLTISMADVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHLLVTRAPILFSSDYKHFYCRYSDPSYVKKLKLEMLTAVANESNTYDIVTELSEYAANVDVAIARESVRAVGKIALQQYDVNAIVDRLLQFLE

Protein Length: 286

Fln nts: AAGTAGAAGAGCCTTCAGAGCCACGGGGAAGTCAGAATCAGTGCACGTAGTGGGAGAAATATGGTATAACTTGAGAACACCAATGGCTGCTACTGTCCTTACATAGCTGTTACTGTCCTGAAGTCCCCGTGGCTCTGAAGGCTCTTCTACTTCATGATCCTGATGCTCAGGTTGTTGCCAATTGCCTGTCGTCTCTTCAAGAAATTTTGACCTTGGAAGGAAACTCTTCTGAGGAAGCATCTAGAGAGAAGGAATTGCTTTTGAGTAAGCCAGTGATCTATGCTCTTTTGAATAGGATCAGGGAGTTCAGTGAGTGGGCTCAATGTCTCATACTGGACTTAGTTGTGAAGTATATCCCTTCTGAAAGCAGTGAGATTTTTGACATTATGAATCTACTTGAGGATAGGCTACAACATGCAAATAGTGCTGTAGTGTTAGCTACAATCAATTTGTTTCTTCACTTAACAATTTCCATGGCTGATGTGCACCAGCAGGTGTATGAACGAATCAAGGCTCCTTTGCTCACTCTGGTGAGTTCAGGAAGCCCAGAACAGTCATATGCAGTCTTGAGCCATCTACATCTGTTGGTGACACGTGCTCCAATACTGTTTTCATCAGATTATAAGCATTTTTATTGTCGCTACAGTGACCCTTCATATGTGAAGAAATTGAAGCTTGAGATGCTTACAGCCGTGGCAAATGAGAGTAATACATATGATATTGTGACGGAGCTCAGTGAATATGCTGCAAATGTTGATGTGGCCATTGCAAGAGAGTCTGTCCGAGCGGTTGGAAAAATTGCATTGCAGCAGTATGATGTCAATGCCATTGTTGACCGCCTTCTTCAGTTCCTAGAGA

Fln Alignment:

AllPineV4_c20637___LLHDPDAQVVANCLSSLQEILTLEGNSSEEASREKELLLSKPVIYALLNRIREFSEWAQCLILDLVVKYIPSESSEIFDIMNLLEDRLQHANSAVVLATINLFLHLT--ISMADVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHLLVTRAPILFSSDYKHFYCRYSDPSYVKKLKLEMLTAVANESNTYDIVTELSEYAANVDVAIARESVRAVGKIALQ
B8LNI5_______________LISDSNPMVVANAVAALAEI--------QENSSRTIFEITSHTLFKLLAALNECTEWGQVFILDALSKYKASDARDAENIVERVTPRLQHANCAVVLSAVKVILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
329	12	87			0.992554
330		12		87	0.992554
332		87	12		0.992554
333	75		12	12	0.975346
334		12		87	0.992554
340	12		87		0.992554
344		12		87	0.992554
504	16		83		0.994512
505		16		83	0.994512
508			83	16	0.994512
558	66		33		0.997452
704		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain