SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33255

Length: 845 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33255 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucosyltransferase n=1 Tax=Cyclamen persicum RepID=A7M6J9_9ERIC	-	-	8.0e-36	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXT2

Fln msg: Separated hits, possible frame ERROR between 367 and 370, Distance to subject end: 193 aas, your sequence is shorter than subject: 267 - 464

Fln protein: MDARKPHIAIFPSAGMGHLIPFFEFAKLLASDHGFSVTFITAKFMVSPSQTAYTKSLASSGLSIRFIELPEVEMDSEEKKLHPLTKIFKVMGKCTSLVENVLRALLSxxSNPISAFITDIFCTGSLEMSKKLQIPSYVLYTGSASNIFIILYHPTMDARMPESLKDLDGPVKVPGLPPIPARDLPDPMQDKSGPFYHLFLRLSNQLLNADGILVNSFQDLERGSVQALRSGQIDGKRIPSVYPVGPLISPPQSDGSGSLQWLDKQPE

Protein Length: 268

Fln nts: ATGGGATGTGAATAGGGCCAAGTAGTTGAGTAACGAACGAAGA_-_ATGGATGCGAGAAAACCTCACATAGCTATCTTCCCATCGGCGGGAATGGGGCACCTCATCCCTTTCTTTGAATTCGCCAAGCTGTTGGCATCCGACCATGGTTTCTCCGTAACATTCATCACCGCCAAGTTCATGGTGTCCCCTTCTCAGACCGCTTACACAAAGTCTCTGGCGTCTTCAGGACTGAGCATCCGTTTTATTGAGCTCCCGGAAGTGGAAATGGATTCTGAAGAAAAGAAGCTGCATCCACTAACAAAGATATTCAAAGTAATGGGGAAGTGTACAAGCCTAGTCGAAAATGTTCTGAGGGCTCTGCTCAGTGAxxxTTCCAATCCAATAAGTGCTTTCATCACTGATATATTCTGCACTGGCTCGCTCGAGATGAGCAAGAAGCTGCAGATACCCAGTTATGTTCTGTACACTGGATCTGCCTCCAATATTTTTATCATTCTCTACCATCCCACCATGGATGCCAGGATGCCGGAATCTTTGAAGGATTTGGACGGCCCGGTGAAGGTACCTGGACTTCCACCCATACCTGCCCGGGATTTACCAGATCCGATGCAGGACAAGTCGGGTCCGTTTTATCACCTCTTCCTCCGCCTTTCGAATCAGTTGTTGAATGCAGACGGGATTCTCGTAAATTCGTTTCAGGATCTGGAGCGCGGAAGCGTTCAAGCTCTCCGCAGTGGCCAGATTGACGGGAAAAGGATACCCTCTGTATATCCGGTCGGGCCCCTCATTTCTCCGCCTCAATCTGATGGGAGCGGCAGCTTGCAATGGCTGGATAAACAGCCTGAAGC

Fln Alignment:

AllPineV4_c19833___MDARKPHIAIFPSAGMGHLIPFFEFAKLLASDHGFSVTFITAKFMVSPSQTAYTKSLASSGLSIRFIELPEVEMDSEEKKLHPLTKIFKVMGKCTSLVENVLRALLSDxSNPISAFITDIFCTGSLEMSKKLQIPSYVLYTGSASNIFIILYHPTMDARMPESLKDLDGPVKVPGLPPIPARDLPDPMQDKSGPFYHLFLRLSNQLLNADGILVNSFQDLERGSVQALRSGQIDGKRIPSVYPVGPLISPPQS---DGSGSLQWLDKQP
A9NXT2_______________MDARKPHVAIFPSVGMGHLIPFFEFAKLLASGHGFSITFITAKFMVTPSQTAYTKSLASSGLSIRFIELPEVELDSEEKKAHPLVLIFKVLEKTTGSVENALRTLLSDxSNPISAFITDIFCTATLEVSKKLQIPSYVLYTGSASNLFLILYHRTMDAEMTESLKDLDGPVKVPGLPSIPARDFPDPMQDKSGPFYHLFLRLSHELLKADGILINTFQDLESGSVQALLSGEIDGTRIPSIYPVGPLISSPESDHHDGSGSLQWLDKQP

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
196	71		28		1.0
260			40	60	1.0
324	75		25		0.996473
384	20	80			0.995493
424			33	66	1.0
476			20	80	0.995493
478			20	80	0.995493
483		20		80	0.995493
484	20			80	0.995493
486		20	80		0.995493
487	40	20			1.0
490	80		20		0.995493
491	80		20		0.995493
513	75		25		0.996473
516	75		25		0.996473
517		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain