SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33239

Length: 1045 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33239

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to DTW domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983E3F	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	dtw domain-containing protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	DTW	IPR005636	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8T4

Fln msg:

Fln protein: MEDCRGDENQKQRRREKCRGGCERPASVCLCNVLPSEALQTSTHIIILQHPHEVRHKLSTVPLLQKCLRNSQVIVGRRLHIGSSPILDAISSQSGAENSKCWQVLLLFPGEEAMDLETWISDRAQSGMPDHPQNENKNGGILVLLIVIDGTWQHAKEMVKASMAFLSSINAFQVCLPYDRNTQGHNMWNSDLILRKEPFGGCVSTMEAVAHSLRILEPTPFAVEIEQRLLSVLRAMVAFQSHNLKPMNPRPRLHKKGH*

Protein Length: 260

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTCTATTTTCCCAAGAAAGCAAATTGGCAATTTTAGGGTTGAAGTCCGGAAGGATACAAAATTAATAAGAGGTAGTGGTAAATGAACTGTA_-_ATGGAGGATTGCCGGGGAGATGAAAATCAGAAGCAGCGGCGGAGGGAGAAGTGCAGAGGAGGGTGTGAGCGACCCGCTAGTGTATGTCTCTGCAATGTATTGCCATCCGAAGCTCTCCAGACTTCAACCCACATTATCATATTGCAGCACCCACACGAAGTTCGTCACAAACTGTCAACGGTCCCTCTTCTCCAAAAATGTCTCCGCAATTCCCAAGTTATAGTCGGCCGTCGTCTGCATATCGGTTCCTCGCCCATCCTCGATGCTATTTCCAGCCAATCTGGTGCAGAGAACTCCAAGTGCTGGCAGGTACTATTGCTGTTCCCTGGCGAAGAAGCAATGGATTTAGAGACATGGATTTCCGATCGAGCACAATCAGGTATGCCCGATCATCCTCAGAATGAGAATAAAAATGGTGGGATATTGGTACTGTTGATAGTTATTGATGGGACATGGCAGCATGCGAAGGAAATGGTTAAGGCAAGCATGGCTTTCCTTAGCAGTATCAATGCCTTCCAAGTTTGTCTACCATATGACCGGAATACACAGGGGCATAACATGTGGAATTCCGATCTAATTCTGAGAAAAGAGCCATTTGGGGGTTGTGTGAGCACAATGGAGGCTGTTGCACATTCCTTAAGAATTCTGGAACCCACACCCTTTGCTGTTGAGATTGAGCAGAGACTTCTATCCGTGTTGCGTGCTATGGTTGCGTTCCAATCCCATAATTTGAAGCCTATGAATCCTCGCCCTAGACTGCACAAGAAAGGTCACTGA___CCCACGGCCACATCAAACAAAACACAAGTATGCATGTGTATTCTGTAGCATTGCAGGTCACATCTCAGTCAGAGTTTGTTGTTGGTGCCAGTCAGTAGCAATGCTGGAACAGGAAATTCGTTCGGCCACCTACAACATCAACTGAATTGC

Fln Alignment:

AllPineV4_c19753___MEDCRGDENXXXXXXXXXXXXXXXPASVCLCNVLPSEALQTSTHIIILQHPHEVRHKLSTVPLLQKCLRNSQVIVGRRLHIGSSPILDAISSQSGAENSKCWQVLLLFPGEEAMDLETWISDRAQSGMPDHP-QNENKNGGILVLLIVIDGTWQHAKEMVKASMAFLSSINAFQVCLPYDRNTQGHNMWNSDLILRKEPFGGCVSTMEAVAHSLRILEPTPFAVEIEQRLLSVLRAMVAFQSHNL-KPMNPRPRLHKKGH*PTAT
D5A8T4_______________MEDCRGEQKQKQQREKCRGGCER-PANVCLCNVLPSEALETSTRIIILQHPHELRHKLSTVPLIQKCLHNSQVIVGRRLHMGSSPILDAICSQSDAEKSKCGHVLFLFPGEEATDLETWISNRAQSGMPDHPPQIENENGGILLLLIVIDGTWQHAKEMVKASMAFLSSIKAFQVCLPYDRNTQGHSMWNSDLILRKEPFGGCVSTIEAVARSLRILEPTPFAVEIEHRLLSVLHAMVAFQSHNLKKPMKPRPRLHKKGHCPTAT

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
675		33	66		0.997452
677			66	33	0.997452
679	66		33		0.997452
681	66		33		0.997452
684	66	33			0.997452
691	66	33			0.997452
693			33	66	0.997452
694		66		33	0.997452
696	33		66		0.997452
697	66	33			0.997452
700	33			66	0.997452
768	75	25			0.996479
769			25	75	0.996479
772			25	75	0.996479
773			75	25	0.996479
776	75	25			0.996479
779		66		33	0.997452
780		66	33		0.997452
781	66		33		0.997452
783	66			33	0.997452
784		66	33		0.997452
785		66		33	0.997452
787	33			66	0.997452
788		33		66	0.997452
790		20	80		0.995493
791	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain