SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33233

Length: 1267 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33233 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SWIM zinc finger-like protein [Arabidopsis thaliana] gb\|AAL91647.1\| At1g60560/F8A5_10 [Arabidopsis thaliana] gb\|AAO11540.1\| At1g60560/F8A5_10 [Arabidopsis thaliana] gb\|AEE33698.1\| SWIM zinc finger-like protein [Arabidopsis thaliana]	-	-	3.0e-07	37%
FL-Next	tr=Os09g0309100 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	35%
Blast2go	swim zinc finger family	-	-	1.63409e-07	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q69L44

Fln msg: your sequence is shorter than subject: 237 - 729

Fln protein: CYWNMASLKNSSLVNNYRLEHMYETSVDKAKRIPDDHCVRDEHIENAYWVQSQSSSNRYLVLFFGQIFSSCNCSWALRGNFCKHVIKVSTLWGDMQDPKEMINLTRQDINFDWLSNVSNLVVCNNGVEEDSVVNANDKNTKQNSAEIEDDDCDGRKCVKIFEECNRKLQMIMSKPPQTLSKSLLLKNLVDKLVKDVNDNCMMNFDFINDGNEQMNFDFINDGNEQTSKRRKRFVSS*

Protein Length: 238

Fln nts: ATGTTACTGGAACATGGCTTCTCTGAAAAATTCTAGTCTTGTAAATAACTATAGGTTGGAGCACATGTATGAAACATCTGTAGACAAAGCAAAAAGAATTCCTGATGACCATTGTGTTCGGGATGAGCACATTGAAAATGCATACTGGGTTCAGAGTCAGTCATCGTCAAATAGATACCTTGTGTTGTTTTTTGGGCAGATTTTCAGTTCATGTAATTGCTCATGGGCATTGAGAGGCAACTTTTGTAAGCATGTTATCAAAGTTAGCACGTTGTGGGGGGACATGCAGGACCCCAAGGAAATGATTAATTTAACTAGACAAGATATTAATTTCGATTGGCTAAGCAATGTATCTAATCTTGTGGTATGTAACAATGGCGTTGAAGAAGATAGTGTCGTAAATGCCAATGATAAAAATACAAAACAAAACAGTGCTGAAATTGAAGATGATGACTGCGATGGTAGGAAGTGTGTCAAAATTTTTGAGGAATGCAACAGAAAATTGCAAATGATAATGTCTAAACCTCCACAAACTTTGTCAAAGTCATTATTGCTGAAAAATCTTGTTGACAAGCTTGTAAAGGATGTTAATGACAATTGTATGATGAATTTTGACTTCATCAATGACGGTAATGAGCAGATGAATTTTGACTTCATCAATGACGGTAATGAGCAGACATCGAAGCGGAGAAAGAGATTTGTAAGCTCCTAA___AAGAGACATTCCAGATATGAAGAGAGAAAAATCTTTTATTGAGAAGGCTCTGAAATGATTTTGATGTTGTGTATGTAAGCAGTACAGGTCTCTTGATGGGTTTGCTGAAAGATCTAGTCGACAAGCTTGTGAAGGATGTTGACACAAATTGTATAATGGATTTTGACTTTATCGATGATGGTAATGAGCAGGCTTTGAAGCATGGGAAAATCTTTCTCCGCTTCTAAAAGAAGCATGGCAGATGTTGAAGAGAGAAAAAGATTTTCTTTAGAAGGTTCTGAAATGATTTTGATGTTGTTTATGTTAAAAGTACATGTTTCTCGATCGTTGTTGACAGGGAAAATCAAACCGTTCATTAGATTCAACTCCGGACGTCACTATGGCTGCAGTTTTTTCTATAGGTTTGCATCCTAGCTTTAACAAAGCGCTACCTTTTTAACATTGGTCATATATGGATATCTACTAGCAGAGAATTTTGATCGTGTATTTAATTGCCAAAGCTGCAAGTTTTTTCTATTTATTAATATATAGTTTTTCAATTGCTTGAGCCTTGAC

Fln Alignment:

AllPineV4_c19719___YWNMASLKNSSLVNNYRLEHMYETSVDKAKRIPDDHCVRDEHIENAYWVQSQS-SSNRYLVLFFGQIFSSCNCSWALRGNFCKHVIKVSTLWGDMQD
Q69L44_______________YWLNLYADESGSFPEVKAEYIASTSWHRALQIPDDAVIFDDKEPFSAKVTSQKDTSQMWTVWNPGSEFSLCDCSWSMQGNLCKHIIKVNMMCGPRKD

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
898		66		33	0.997452
901		66		33	0.997452
922	25			75	0.996473
924			75	25	0.996473
925	75		25		0.996473
938		75		25	0.996473
1114		20		80	0.995493
1175	20		80		0.995493
1178	80			20	0.995493
1199		33	66		0.997453
1208			33	66	0.997458
1209	33		66		0.997452
1210	33			66	0.997453
1212			33	66	0.997454
1213		66	33		0.997452
1216	66			33	0.997452
1217		66	33		0.997452
1218	66		33		0.997452
1223	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain