SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33217

Length: 541 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene33217
CGTCGTGACCTTGGCTGTCACTCGTCGTTCCTGGCTTTCACTGAAGTGGTTGCGCCAATGGCTGGATGCGTTGTGAAGGTTCTAGTAGAAGATGGGGCAATGGTAAAGAAGGGCCAATCTATTCTAGTTTTAGAAGCCATGAAAATGGAGCATGTAGTCAAAGCACCATATGAAGGTTGTGTTCGAAAGCTACAGGCTGTGGTTGGGCAGCAGGTGTTCGATAATTCTGTTCTTTTCAGTATTGAGGATAAATAATGCTATTAGCAAGACTATTTTCAATGGAAAGGATATGGTATTTGGTGGGAATCTTGATCGAGGATGGTGAAAACTTTCTTGATTAATAGATATAAGCCATTCACCAGGAGACTGAAAGTGAAATCTTCTTATAATGTTGAGATAAAGGATATTCCAGCATTCATTGTGAACCAAATGCAGAAAATATAACCGTATGTATCACATCAACATGAACATGTACAAAATATAATCGCAAGTTAAGGCATGAACATGTATAAAATGTAGAGCGTGAGGCTCTTTTTACTCC

Ace file of the UniGene sp_v2.0_unigene33217

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetyl-CoA carboxylase, putative n=1 Tax=Ricinus communis RepID=B9SFG9_RICCO	-	-	6.0e-19	73%
FL-Next	sp=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	0.0	64%
Blast2go	methylcrotonoyl- carboxylase subunit alpha	-	-	5.01231e-21	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	5.01231e-21	80%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	5.01231e-21	80%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Biotin-binding site	IPR001882	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Carbamoyl-phosphate synthase, large subunit, N-terminal	IPR005481	-	-
Sma3	Biotin carboxylase, C-terminal	IPR005482	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	Biotin carboxylation domain	IPR011764	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q2QMG2

Fln msg: your sequence is shorter than subject: 85 - 737

Fln protein: RRDLGCHSSFLAFTEVVAPMAGCVVKVLVEDGAMVKKGQSILVLEAMKMEHVVKAPYEGCVRKLQAVVGQQVFDNSVLFSIEDK*

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTTCCTGGCTTTCACTGAAGTGGTTGCGCCAATGGCTGGATGCGTTGTGAAGGTTCTAGTAGAAGATGGGGCAATGGTAAAGAAGGGCCAATCTATTCTAGTTTTAGAAGCCATGAAAATGGAGCATGTAGTCAAAGCACCATATGAAGGTTGTGTTCGAAAGCTACAGGCTGTGGTTGGGCAGCAGGTGTTCGATAATTCTGTTCTTTTCAGTATTGAGGATAAATAA___TGCTATTAGCAAGACTATTTTCAATGGAAAGGATATGGTATTTGGTGGGAATCTTGATCGAGGATGGTGAAAACTTTCTTGATTAATAGATATAAGCCATTCACCAGGAGACTGAAAGTGAAATCTTCTTATAATGTTGAGATAAAGGATATTCCAGCATTCATTGTGAACCAAATGCAGAAAATATAACCGTATGTATCACATCAACATGAACATGTACAAAATATAATCGCAAGTTAAGGCATGAACATGTATAAAATGTAGAGCGTGAGGCTCTTTTTACTCC

Fln Alignment:

AllPineV4_c19642___VVAPMAGCVVKVLVEDGAMVKKGQSILVLEAMKMEHVVKAPYEGCVRKLQAVVGQQVFDNSVLFSIED
Q2QMG2_______________VLAPMAGLVVKVLLKDGARVEEGQPVMVMEAMKMEHVVKAPCAGYVEGLKATAGQQVFDSSVLFTVKE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
88	75	25			0.996473
91	75	25			0.996473
94	75			25	0.996473
98		25		75	0.996473
99			75	25	0.996474
100			75	25	0.996476
104	75			25	0.996474
105	75		25		0.996474
107		25	75		0.996473
108	25		75		0.996473
109		25		75	0.996473
110	75			25	0.996473
111	75	25			0.996474
416	40	60			1.0
418	20		80		0.995493
505	66	33			0.997452
510			25	75	0.996474
520	75			25	0.996473
521	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain