SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33173

Length: 1777 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene33173 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[T] COG0631 Serine/threonine protein phosphatase	-	-	4.0e-31	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	probable protein phosphatase 2c 49-like	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQA0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 374 - 397

Fln protein: GK*PFGNEEGSTFVRDGQTA*AQRDIANYTTIHLLTHFLGDLRTASLIPNSKPSIENGKEQFMPIIRSGSFTNIGPRRSMEDEHICVDDLSKHLGTKFEGPKPSAFYGVFDGHGGAEAAIFIRNNLLKFVTEDADFPRIQKKDADFQSAAEKVLRNAFLVADLALADDSDVDNSCGTTVLTALIVGRSLVVANAGDCRAVLCRRGKAVEMSRDHKPDCLSERLRIESLGGFVDDGYVNGYLSVARALGDWDMKLPKGSCSPLSAEPEFRLADLTEEDEFLIIGCDGIWDVMSSDHAVSIARKELMRHNDPQQCSEELVLEALRRKTLDNLTVVVVCFSAEPPPPPPCIERPRLRLCNISAEGIRNLRNLLDKV*

Protein Length: 375

Fln nts: AAGGTAAATGACCCTTTGGTAATGAAGAGGGTTCTACCTTTGTCCGGGATGGACAAACTGCCTAGGCTCAGAGAGATATCGCAAATTACACAACAATACACCTGTTAACGCATTTTCTGGGGGATTTGAGGACTGCAAGTTTGATTCCAAACTCAAAGCCCTCTATTGAGAATGGGAAGGAGCAGTTCATGCCAATCATACGGTCTGGTAGTTTTACAAATATTGGTCCCAGGCGGTCCATGGAAGATGAACACATATGTGTTGATGATTTGTCGAAACATCTTGGTACAAAGTTTGAGGGACCAAAACCAAGTGCCTTCTATGGGGTATTTGATGGACACGGGGGTGCCGAGGCAGCCATCTTTATTCGAAACAACCTTCTGAAATTTGTCACCGAAGACGCTGATTTCCCTAGGATTCAGAAAAAAGATGCTGATTTTCAAAGTGCGGCTGAAAAGGTTTTAAGGAATGCATTTCTTGTAGCTGATCTTGCATTGGCTGATGACTCTGATGTTGATAATTCCTGTGGCACAACAGTCTTGACGGCACTAATTGTGGGAAGGTCTCTCGTCGTGGCTAATGCTGGGGACTGTCGGGCAGTGTTGTGTAGGAGGGGGAAAGCAGTGGAAATGTCTAGAGACCATAAACCTGATTGTCTCAGTGAAAGATTGCGGATTGAATCTTTGGGAGGCTTTGTGGATGATGGATATGTAAATGGTTATTTATCAGTTGCTAGAGCGTTAGGTGACTGGGACATGAAATTGCCAAAAGGCTCTTGTAGTCCTCTCAGTGCAGAGCCTGAATTTCGACTGGCAGATCTTACAGAAGAAGATGAATTTTTGATAATTGGTTGTGATGGCATTTGGGATGTTATGTCAAGCGATCACGCAGTCAGCATTGCACGGAAAGAGCTTATGCGGCACAATGATCCGCAGCAGTGTTCCGAGGAGCTTGTTTTAGAGGCTTTGCGGCGCAAGACACTTGACAATCTGACGGTTGTGGTAGTCTGCTTTTCGGCTGAACCTCCACCTCCTCCACCTTGCATCGAGCGCCCCAGGCTCAGATTGTGTAATATATCTGCAGAAGGCATTCGTAACCTGAGGAATTTACTAGACAAGGTGTGA___AGGTGGCAGCTATGGACAAACTGGACTGCTCTCAGCGGCGAACATGTCTATGTGCAGTTCACTCGGGACATGAAATTCCTGTTACATATGATATAATAGACGAATGGGTCCTTGATCTTCTGGAAGTGCAATGGTAATAAGACATCAAAAAATGTAATGCATCTCTCATCCAGCACGATATAGTATTACTGGTCATTTTCAAACCATGGCTGGAATCAATTCTAAATTGTGGCAATTATATTTAAAATGGAGGGGACCCATATCACATAATGTTTGCTGCACTGGCCTGTTTTTTAATGACTTGCTACAGGCATGAACAGTTGGACACTATGACTTTCATGAAGACTCTAGATCTCGAAAACCGAGAGCGTCCAGATTCCTCAAATGCTCTGAGAGATACTTTACTGGTTTGGGGGTATTTTGATCCATGGAAATATTTTTGCTGTCGTTGGAACTTGTCTGATACTTATCCTCAGTTTTGCACAGGGATAACAAACATGGAAAATGTAATTTCATTGACAGGGAGTTCTTTATCTCCTAAACTTTTATTACTACTCGATTTATTACAATTGTTTGTAACAATTAATATTATCCACTCTGATGTATTTTTTGTTATGCAGTGCAATAAATGGCAAAAATGTTTTAACATTAGT

Fln Alignment:

AllPineV4_c19380___ENGKEQFMPIIRSGSFTNIGPRRSMEDEHICVDDLSKHLGTKFEGPKPSAFYGVFDGHGGAEAAIFIRNNLLKFVTEDADFPRIQKKDADFQSAAEKVLRNAFXXXXXXXXXXXXXDN--SCGTTVLTALIVGRSLVVANAGDCRAVLCRRGKAVEMSRDHKPDCLSERLRIESLGGFVDDGYVNGYLSVARALGDWDMKLPK----GSCSPLSAEPEFRLADLTEEDEFLIIGCDGIWDVMSSDHAVSIARKELMRHNDPQQCSEELVLEALRRKTLDNLTVVVVCFSAEXXXXXPCIERPRLRLCNISAEGIRNLRNLLDKV
B8LQA0_______________ENVATNFIPVLRSGGWADIGDRDCMEDTHICIDSFVDKFGFPPIEEGPGAFYGVFDGHGGKHAAQFACDRLPSLIVKDADFPL----------QIEKAARRAFLQTDNAFAEACSHDAGLSSGTTALVAVIIGRYLLVANAGDCRAVLSRRGKAIEMSRDHRPDCTKERIRIEASGGYIDDGYLNGQLNVTRALGDWHMEGLKAHGVSGCGPLSAEPELKRITLTEEDEFLIIGCDGLWEVFLSQNAVDFARRKLQEHNDPLVCCKELIDEALKRKTADNLTAVVVCLQSD-PPPNLVVPRSRVRR-SISAEGLRGLQSYLDSL

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1242	16	83			0.999991
1316			90	10	0.90298
1359		85		14	0.993533
1433		40		60	1.0
1461	88		11		0.991528
1462		88		11	0.923564
1513	12			87	0.992554
1514			12	87	0.992554
1522	87		12		0.992554
1523		12		87	0.992554
1526	12	12		75	0.975346
1527		87	12		0.992554
1528	87		12		0.992554
1529	87			12	0.992554
1534			12	87	0.992554
1536		12		87	0.992554
1578	20			80	0.995493
1579	80		20		0.995493
1580	80			20	0.995493
1581	80		20		0.995493
1584	20			80	0.995493
1585	80		20		0.995493
1592		80	20		0.995493
1596		20		80	0.995493
1600		20		80	0.995493
1673	25	75			0.996474
1674		75	25		0.996474
1675	50	50			1.0
1676	75			25	0.996473
1677			75	25	0.996473
1678	66			33	0.997454
1679	66		33		0.997454
1680	66			33	0.997454
1681	66	33			0.997454
1684	33	66			0.997452
1686	33			66	0.997452
1687		33		66	0.997452
1688	66		33		0.997452
1692		33	66		0.997452
1693		33	66		0.997452
1697			33	66	0.997452
1701	33		66		0.997452
1705		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain