SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32909

Length: 446 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene32909
CGTCGTGACCTTGGCTGTCACTCAGTGTTTCCAGGCGAAAGAAAGGCTGCCCATGGGTCAATATTGGATCCCCACACCATCTCAGATTCTCGTCGGTCCTACACAGTTTTCCTGCGCTGTCTGTAATAAGACCTTCAATCGTTATAACAATATGCAGATGCACATGTGGGGACATGGATCCCAGTACAGAAAAGGTCCGGACTCGTTGCGAGGAACTAAGCTTCAGCCATCATGCGGCTGCCATGTTACTGCTGTTCACCGGGTTGCAGAAATAGCATAGACCACCCGCGTTCGAACCCCTCAAGGACTTCCGAACGCTACAGACCCACTACAAGCAAAGCACGGCATGAAGCCCTTCGCGTGCCGCAAATGCAGTAAGGCGTTTGCCGTGCGCGGAGACTGGCGCACCCACGAGAAGAACTGCGGCAACTCTGGTTCTGCATGTG

Ace file of the UniGene sp_v2.0_unigene32909

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	protein	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQR7

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 148 - 225

Fln protein: VVTLAVTQCFQAKERLPMGQYWIPTPSQILVGPTQFSCAVCNKTFNRYNNMQMHMWGHGSQYRKGPDSLRGTKLQPSCGCHVTAVHRVAEIA*TTRVRTPQGLPNATDPLQAKHGMKPFACRKCSKAFAVRGDWRTHEKNCGNSGSAC

Protein Length: 149

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTCCAGGCGAAAGAAAGGCTGCCCATGGGTCAATATTGGATCCCCACACCATCTCAGATTCTCGTCGGTCCTACACAGTTTTCCTGCGCTGTCTGTAATAAGACCTTCAATCGTTATAACAATATGCAGATGCACATGTGGGGACATGGATCCCAGTACAGAAAAGGTCCGGACTCGTTGCGAGGAACTAAGCTTCAGCCATCATGCGGCTGCCATGTTACTGCTGTTCACCGGGTTGCAGAAATAGCATAGACCACCCGCGTTCGAACCCCTCAAGGACTTCCGAACGCTACAGACCCACTACAAGCAAAGCACGGCATGAAGCCCTTCGCGTGCCGCAAATGCAGTAAGGCGTTTGCCGTGCGCGGAGACTGGCGCACCCACGAGAAGAACTGCGGCAACTCTGGTTCTGCATGTG

Fln Alignment:

AllPineV4_c18295___QAKERLPMGQYWIPTPSQILVGPTQFSCAVCNKTFNRYNNMQMHMWGHGSQYRKGPDSLRGTK-----LQPSCGCHVTAVHRVAEIA*TTRVRTPQGLPNATDPLQAKHGMKPFACRKCSKAFAVRGDWRTHEKNCG
A9NQR7_______________EGRTRFSESQYWIPTPSQILIGATQFSCPVCAKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAILLRLPCYCCTQGCRNNID---HPRAKPLKDFRTLQTHYKRKHGIKPFMCCKCNKTFAVRGDWRTHEKNCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain