SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32903

Length: 401 nt

UniGene Fasta

>sp_v2.0_unigene32903
ATGGAGTAGTAGGGGCTCCAGTGAGACTGCCTATAAGTGTCTTCTGGTTAGCTCCTCAGTTTGTTTTGCTTGGGATAGCGGATGTATTTACACTGGTAGGGTTGCAGGAATATTTCTATGATCAGGGTCCAGATGGCATGAGAAGCTTGGGAATCGCCTTCTATCTCAGTGTTGTTGGAGTTGGCAACTTTCTCAGTACTTTCCTCATCACCATTGTTGAGAAAGTTACCGAACTTCGAGGACATGAGAGCTGGTTTACTACCAATCCCAAGGGGCTTCACTGGGACTATTTCTACTGGCTTTTGGCAGTTCTTGGGGCTCTGAATCTATGTGTTTACCTATATGCCGCACGAACATATACATACAAGAAAGTAAAGCCGGTAGAAGAGAGTATCGATGCT

Ace file of the UniGene sp_v2.0_unigene32903

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Similar to peptide transporter [Arabidopsis thaliana]	-	-	5.0e-35	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Blast2go	peptide transporter ptr1	-	-	1.12104e-44	73%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	POX	IPR006563	-	-
Sma3		IPR012287	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ68

Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 133 - 407

Fln protein: GVVGAPVRLPISVFWLAPQFVLLGIADVFTLVGLQEYFYDQGPDGMRSLGIAFYLSVVGVGNFLSTFLITIVEKVTELRGHESWFTTNPKGLHWDYFYWLLAVLGALNLCVYLYAARTYTYKKVKPVEESIDA

Protein Length: 134

Fln nts: ATGGAGTAGTAGGGGCTCCAGTGAGACTGCCTATAAGTGTCTTCTGGTTAGCTCCTCAGTTTGTTTTGCTTGGGATAGCGGATGTATTTACACTGGTAGGGTTGCAGGAATATTTCTATGATCAGGGTCCAGATGGCATGAGAAGCTTGGGAATCGCCTTCTATCTCAGTGTTGTTGGAGTTGGCAACTTTCTCAGTACTTTCCTCATCACCATTGTTGAGAAAGTTACCGAACTTCGAGGACATGAGAGCTGGTTTACTACCAATCCCAAGGGGCTTCACTGGGACTATTTCTACTGGCTTTTGGCAGTTCTTGGGGCTCTGAATCTATGTGTTTACCTATATGCCGCACGAACATATACATACAAGAAAGTAAAGCCGGTAGAAGAGAGTATCGATGCT

Fln Alignment:

AllPineV4_c18259___GVVGAPVR-LPISVFWLAPQFVLLGIADVFTLVGLQEYFYDQGPDGMRSLGIAFYLSVVGVGNFLSTFLITIVEKVTELRGHESWFTTNPKGLHWDYFYWLLAVLGALNLCVYLYAARTYTYKKV
B8LQ68_______________GLLDSPTTTIPMSAFWLVPQFVLAGIADVFTLVGLQEYFYNEAPDSMRSLGIAFYVSVLGVASFLNGLVITLVESMSKRGGHEGWLVNNLNRCKLEYFYWLLAIFSAINLCCYVFIANIYNYKKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain