SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32882

Length: 828 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene32882

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LisH domain containing protein	-	-	4.0e-05	48%
FL-Next	sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	ddb1- and cul4-associated factor homolog 1-like	-	-	0.0	53%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	53%
Blast2go	leaf development	GO:0048366	Biological Process	53%
Blast2go	flower development	GO:0009908	Biological Process	53%
Blast2go	protein binding	GO:0005515	Molecular Function	53%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	53%
Blast2go	nucleus	GO:0005634	Cellular Component	53%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
220			25	75	0.996473
221		75	25		0.996473
222	25		25		0.995533
508	16	16			0.988834
509	83		16		0.994516
510			83	16	0.994512
511	16		66	16	0.988813
573		80		20	0.995493
616		66		33	0.997452
656	66			33	0.997452
658		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain