SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32839

Length: 585 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene32839 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative mitogen-activated protein kinase 1 [Medicago sativa]	-	-	5.0e-25	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	mitogen-activated protein kinase kinase kinase 1-like	-	-	6.14505e-35	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
399		90	10		0.90298
401		10		90	0.90298
402	10	90			0.90298
403			10	90	0.90298
404	10			90	0.90298
407	10			90	0.90298
408			10	90	0.90298
414	77		11		0.968132
416	88	11			0.923604
417	88		11		0.923604
466	88			11	0.923564
511		85	14		0.993533
512		14		85	0.993533
514	14		85		0.993533
517			14	85	0.993533
523	14	85			0.993533
524	85	14			0.993533
553	66	33			1.0
554	66	33			1.0
555	66	33			1.0
556		33		66	1.0
557	33			66	1.0
563	75	25			0.996473
564	75	25			0.996473
569	66		33		0.997453
571		66	33		0.997453
573		66	33		0.997453
574	33			66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain