SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32764

Length: 289 nt

UniGene Fasta

>sp_v2.0_unigene32764
CGTCGTGACCTTGGCTGTCACTCAATAGATGAGTTGCTAGCAAATGTAAGAATGGATGTACCTATTAGCCTCTGTTCTGTTGCTTCAATAGGGGATGCCCTTCTAATGGAGCAATTATTGAAAAGAGGGATGGATCCTAATGAATCAGACAGCAATGGCCGCACACCCTTGCACATTGCCACAGCAAATGGCTTTAAAGATTGTGTCAATCTTCTTTTGGAATATGGAGCAGATGTCAATAGCAAGGATGAAGACGGAAGTGTTCCTCTGTGGGAAGCAATACTGGGCC

Ace file of the UniGene sp_v2.0_unigene32764

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Potassium channel NKT1 n=1 Tax=Nicotiana tabacum RepID=Q5NT80_TOBAC	-	-	1.0e-25	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	potassium channel akt1-like	-	-	5.17667e-30	77%

Source	InterPros	Term	Type	Identity
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Potassium channel, voltage-dependent, EAG/ELK/ERG	IPR003938	-	-
Sma3	Ion transport	IPR005821	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS80

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 96 - 354

Fln protein: RRDLGCHSIDELLANVRMDVPISLCSVASIGDALLMEQLLKRGMDPNESDSNGRTPLHIATANGFKDCVNLLLEYGADVNSKDEDGSVPLWEAILG

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGATGAGTTGCTAGCAAATGTAAGAATGGATGTACCTATTAGCCTCTGTTCTGTTGCTTCAATAGGGGATGCCCTTCTAATGGAGCAATTATTGAAAAGAGGGATGGATCCTAATGAATCAGACAGCAATGGCCGCACACCCTTGCACATTGCCACAGCAAATGGCTTTAAAGATTGTGTCAATCTTCTTTTGGAATATGGAGCAGATGTCAATAGCAAGGATGAAGACGGAAGTGTTCCTCTGTGGGAAGCAATACTGGGCC

Fln Alignment:

AllPineV4_c17897___DELLANVRMDVPISLCSVASIGDALLMEQLLKRGMDPNESDSNGRTPLHIATANGFKDCVNLLLEYGADVNSKDEDGSVPL
C0PS80_______________EETSEDTEKETPLTLTHVASTGDVKELQSLLAKGVDKDKKDSQGRTALHFACGYGNARCVEVLLEAGALVDPLDKNNNTPL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain