SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32277

Length: 482 nt

UniGene Fasta

>sp_v2.0_unigene32277
ATGGGGCCTTTTTTCTAATCGTAGGAGCTGTTGTATGGATTCTAGAGCATAGAATAAACCATGAGTTTCGTGGGCATCCAAAGCGGCAAGTTAGTAATGTTCTCTGGTTTTCTTTCTCAACGATGTTCTTTTCACAGAAGGAAAACACTAAAAGCACCCTTGGACGAGCAGTGCTCATCATATGGCTATTCGTGGTCTTAATCATCAGTCAAAGTTACACTGCAAGTCTTACATCAATCCTCACAGTGCAGCAGCTTTCAACAACAATTCAAGGAATCGATGGCTTAGTTTCAAGCAATTTCCCAATAGGATATCAAACAGGATCATTTGTTCAAAACTATTTATCAGAAACGTTCAATATAGCCAAATCCAGACTAGTTCCTTTGGATTCAATCGAGCATTATGCTAGAGCATTATCCCTGGGACCAAACAGACCAGGAGGCGTAGCAGCAATTGTGGACGAGTATCCCTATATTCAATTG

Ace file of the UniGene sp_v2.0_unigene32277

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate receptor n=1 Tax=Populus trichocarpa RepID=B9GU66_POPTR	-	-	65%
FL-Next	sp=Glutamate receptor 3.1; Oryza sativa subsp. japonica (Rice).	-	-	65%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XP59

Fln msg: Distance to subject end: 184 aas, your sequence is shorter than subject: 160 - 938

Fln protein: GAFFLIVGAVVWILEHRINHEFRGHPKRQVSNVLWFSFSTMFFSQKENTKSTLGRAVLIIWLFVVLIISQSYTASLTSILTVQQLSTTIQGIDGLVSSNFPIGYQTGSFVQNYLSETFNIAKSRLVPLDSIEHYARALSLGPNRPGGVAAIVDEYPYIQL

Protein Length: 161

Fln nts: ATGGGGCCTTTTTTCTAATCGTAGGAGCTGTTGTATGGATTCTAGAGCATAGAATAAACCATGAGTTTCGTGGGCATCCAAAGCGGCAAGTTAGTAATGTTCTCTGGTTTTCTTTCTCAACGATGTTCTTTTCACAGAAGGAAAACACTAAAAGCACCCTTGGACGAGCAGTGCTCATCATATGGCTATTCGTGGTCTTAATCATCAGTCAAAGTTACACTGCAAGTCTTACATCAATCCTCACAGTGCAGCAGCTTTCAACAACAATTCAAGGAATCGATGGCTTAGTTTCAAGCAATTTCCCAATAGGATATCAAACAGGATCATTTGTTCAAAACTATTTATCAGAAACGTTCAATATAGCCAAATCCAGACTAGTTCCTTTGGATTCAATCGAGCATTATGCTAGAGCATTATCCCTGGGACCAAACAGACCAGGAGGCGTAGCAGCAATTGTGGACGAGTATCCCTATATTCAATTG

Fln Alignment:

AllPineV4_c16912___GAFFLIVGAVVWILEHRINHEFRGHPKRQVSNVLWFSFSTMFFSQKENTKSTLGRAXXXXXXXXXXXXSQSYTASLTSILTVQQLSTTIQGIDGLVSSNFPIGYQTGSFVQNYLSETFNIAKSRLVPLDSIEHYARALSLGPNRPGGVAAIVDEYPYIQL
Q7XP59_______________GLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWFSFSTLFFAHREDTRSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPITGIDSLITSDVPIGFQVGSFAENYLAQELGVAHSRLKALGSPEEYKKALDLGPSK-GGVAAIVDERPYIEL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
281		33		66	0.997453
328	33			66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain