SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32207

Length: 553 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene32207
TGTATCCAATGGCAAATGTTAACTTTACCCCCGCCCGTGACGGAACATCCTCCGCATCCACCTCCCAGGTCAATACCAACAGCTATGTGTATGAAGTGTTTCTAAATCACCGTGGTCCTGATGTCAAGAAAGGTCTCGCTACCGATATCTACAATGGCCTTAAAAAGCTCGGATTATCAGTTTTCCTAGACGAGAGAGAACTGCAAGTAGGAGAGAAGTTGGATGCCCAAATCGAAGGGGCTATTAAAACATCCTCTGTTCATGTAGCAATATTCTCTCCAAATTATGCTCAATCTAGATGGTGTCTAGACGAACTCGTACAGATGTTGGAGTCGGGGTCCACAATAATTCCGGTCTTCTACAAAGCGGATCTCCGGTGGACGCGCGGAGGGGATCGAGTTTATGCGCGTCATCTAGGGGAGCTCGAAGGGAAGAGAAAATCTGATTCTCAGGGACCACGGTACGACCCCAAGACCATAGAAAATGGAGGAATGCTCTTTCTGCTGTGGCGAATATAATCGGTTTTGAGCTGAAGGACAAGTACCTATTATTT

Ace file of the UniGene sp_v2.0_unigene32207 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	2.0e-40	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	tir nbs lrr disease resistance protein	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 386 aas, your sequence is shorter than subject: 170 - 579

Fln protein: MANVNFTPARDGTSSASTSQVNTNSYVYEVFLNHRGPDVKKGLATDIYNGLKKLGLSVFLDERELQVGEKLDAQIEGAIKTSSVHVAIFSPNYAQSRWCLDELVQMLESGSTIIPVFYKADLRWTRGGDRVYARHLGELEGKRKSDSQGPRYDPKTIENGGMLFLLWRI*

Protein Length: 171

Fln nts: TGTATCCA_-_ATGGCAAATGTTAACTTTACCCCCGCCCGTGACGGAACATCCTCCGCATCCACCTCCCAGGTCAATACCAACAGCTATGTGTATGAAGTGTTTCTAAATCACCGTGGTCCTGATGTCAAGAAAGGTCTCGCTACCGATATCTACAATGGCCTTAAAAAGCTCGGATTATCAGTTTTCCTAGACGAGAGAGAACTGCAAGTAGGAGAGAAGTTGGATGCCCAAATCGAAGGGGCTATTAAAACATCCTCTGTTCATGTAGCAATATTCTCTCCAAATTATGCTCAATCTAGATGGTGTCTAGACGAACTCGTACAGATGTTGGAGTCGGGGTCCACAATAATTCCGGTCTTCTACAAAGCGGATCTCCGGTGGACGCGCGGAGGGGATCGAGTTTATGCGCGTCATCTAGGGGAGCTCGAAGGGAAGAGAAAATCTGATTCTCAGGGACCACGGTACGACCCCAAGACCATAGAAAATGGAGGAATGCTCTTTCTGCTGTGGCGAATATAATCGGTTTTGAGCTGAAGGACAAGTACCTATTATTT

Fln Alignment:

AllPineV4_c16751___MANVNFTPARDGTSSASTS----QVNTNSYVYEVFLNHRGPDVKKGLATDIYNGLKKLGLSVFLDERELQVGEKLDAQIEGAIKTSSVHVAIFSPNYAQSRWCLDELVQMLESGSTIIPVFY---KADLRWTRG----GDRVYARHLGELEGKRKSDSQGPRYDPKTIE
B8LRB4_______________MANVNLTPARDATSFASSSTSPSHANTNSYVYDVFINHRGPDVKKGLASHLYHRLKAYGLGVFLDQQELERGENMTPQIEGAIRTASIHIAIFSPTYAESSWCLKELVMMLESGSTIIPVFYHVRPCELRWTRGGNGDGDGVYARALCTLEKKRTFDQEKPRHDSNTIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain