SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene32049

Length: 346 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene32049
TAATGAACAACGCCACGCAATTCATCTGGCAGACCTTCGCCCAGCAATCCTCCGCCGACAGGAAGAATGTGCAGACGGCCACTCTGTTTGTAGAAAGCATAAGCGACAGCGGAATCGCGGCCTACACGAGCAACGACCAAATCCACTTGAGAGCGGAGTACGTTGCAGTTACCAAGGCGACGTAAAGACTGAGATCACAGGCCTTCTGTACCACGAGATGACCAAAGTCTGGCAGTGGAACGGCAACGGCAACGCGCCGTCAGGCCTGATCGAAGGCATTGCGGATTATGTTCGCCCCACTGCGGGCCTCCTCTCCTCTACATGGCTTAAACCCGGCAGCGGTGAC

Ace file of the UniGene sp_v2.0_unigene32049 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	secretory protein [Triticum aestivum]	-	-	3.0e-25	68%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	50%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Uncharacterised protein family, basic secretory protein	IPR007541	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C6T5T1

Fln msg: Separated hits, possible frame ERROR between 164 and 170, Distance to subject end: 70 aas, your sequence is shorter than subject: 115 - 237

Fln protein: MNNATQFIWQTFAQQSSADRKNVQTATLFVESISDSGIAAYTSNDQIHLRAEYxxxYQGDVKTEITGLLYHEMTKVWQWNGNGNAPSGLIEGIADYVRPTAGLLSSTWLKPGSGD

Protein Length: 116

Fln nts: TAATGAACAACGCCACGCAATTCATCTGGCAGACCTTCGCCCAGCAATCCTCCGCCGACAGGAAGAATGTGCAGACGGCCACTCTGTTTGTAGAAAGCATAAGCGACAGCGGAATCGCGGCCTACACGAGCAACGACCAAATCCACTTGAGAGCGGAGTACGTxxxxxxTTACCAAGGCGACGTAAAGACTGAGATCACAGGCCTTCTGTACCACGAGATGACCAAAGTCTGGCAGTGGAACGGCAACGGCAACGCGCCGTCAGGCCTGATCGAAGGCATTGCGGATTATGTTCGCCCCACTGCGGGCCTCCTCTCCTCTACATGGCTTAAACCCGGCAGCGGTGAC

Fln Alignment:

AllPineV4_c16395___MNNATQFIWQTFAQQSSADRKNVQTATLFVES-ISDSGIAAYTSNDQIHLRAEYVxxYQGDVKTEITGLLYHEMTKVWQWNGNGNAPSGLIEGIADYVRPTAGLLSSTWLKPGSG
C6T5T1_______________LDSATQFIWGVFQQNAPADRKDIQKINLFVEDRVVPNGVVAYTSKDEIHVIAKYVxxYGGDVKTEITGVLYHEMVHVWQWNGNGQVPSGLIEGIADYVRLKANYAPSHWKKAGEG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain