SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene31896

Length: 570 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene31896
AAATTCTGTATAGGCACCCCTATTTTTAAATCATGGCGTATGACGCCAGAGTTTCTCGCAGAAGCGAATTTCAACGTTACGTTGCGTGGTGCAGTTCGTTTGTTACTATATATTGATTCTCTGTTTCGATAGGATTCGCGGATCCAGATTCAATTGAGGGAATCAAAGAATTCTTTGTGAAATTTTCAGCGGATATCGAGACAGCGAGCTTAGATCTGAGAACTCATTTTCTTTACGGCCTTCGTTCAGATATATTTTTCGCAGGAAGTTGAAGCTCTGTTTCGACTTTAAATCCTCTGAAGAGGCTCTAATAATGGCGGATGACTCGGCCGAGGGGGTGTCGGAGAAAGCCGTGGGCAGAGAGGAACTGAGGAGGGTTTTCTCGACCTTCGACAAGAATGGCGACGGGCTTATCAGCAAACAGGAGATGAAAGAGTCCTTTGATAATCTCAGGCTGTGCGTGGGCGAAGAGGAATTGGCCTCCACGATTCGAACCGTGGACGTCAATGGCGATGGGTACGTGGATTTTGAGGAGTTCGTTTCGCTGTATGAATCGATTAGTGGTAAGCG

Ace file of the UniGene sp_v2.0_unigene31896

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin, putative n=1 Tax=Ricinus communis RepID=B9SME7_RICCO	-	-	2.0e-14	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKN2

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 85 - 183

Fln protein: MADDSAEGVSEKAVGREELRRVFSTFDKNGDGLISKQEMKESFDNLRLCVGEEELASTIRTVDVNGDGYVDFEEFVSLYESISGK

Protein Length: 86

Fln nts: AAATTCTGTATAGGCACCCCTATTTTTAAATCATGGCGTATGACGCCAGAGTTTCTCGCAGAAGCGAATTTCAACGTTACGTTGCGTGGTGCAGTTCGTTTGTTACTATATATTGATTCTCTGTTTCGATAGGATTCGCGGATCCAGATTCAATTGAGGGAATCAAAGAATTCTTTGTGAAATTTTCAGCGGATATCGAGACAGCGAGCTTAGATCTGAGAACTCATTTTCTTTACGGCCTTCGTTCAGATATATTTTTCGCAGGAAGTTGAAGCTCTGTTTCGACTTTAAATCCTCTGAAGAGGCTCTAATA_-_ATGGCGGATGACTCGGCCGAGGGGGTGTCGGAGAAAGCCGTGGGCAGAGAGGAACTGAGGAGGGTTTTCTCGACCTTCGACAAGAATGGCGACGGGCTTATCAGCAAACAGGAGATGAAAGAGTCCTTTGATAATCTCAGGCTGTGCGTGGGCGAAGAGGAATTGGCCTCCACGATTCGAACCGTGGACGTCAATGGCGATGGGTACGTGGATTTTGAGGAGTTCGTTTCGCTGTATGAATCGATTAGTGGTAAGCG

Fln Alignment:

AllPineV4_c16047___SEEALIMADDSAEGVSEKAVGREELRRVFSTFDKNGDGLISKQEMKESFDNLRLCVGEEELASTIRTVDVNGDGYVDFEEFVSLYESISGK
B8LKN2_______________SEKALTMADNSAEGVSNNAVGRDELRRVFAIFDKNGDGLISKQEMRESFDKLRLCIGEEELASTIRTVDVNGDGYVDFDEFVTLYESMSGK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
247	14	85			0.993533
332		57	42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain